Dennis Kostka

10PUBLICATIONS
38CO-AUTHORS
Gene expression (incl. microarray and other genome-wide approaches)Genomics and transcriptomicsMedical molecular engineering of nucleic acids and proteinsDeep learningSequence analysis
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Publications (10)

|Oct 09, 2025
Ultra-fast variant effect prediction using biophysical transcription factor binding models.

Rezwan Hosseini, Ali Tugrul Balci, Dennis Kostka

|Jun 12, 2025
"Frustratingly easy" domain adaptation for cross-species transcription factor binding prediction.

Mark Maher Ebeid, Ali Tuğrul Balcı, Maria Chikina

|Sep 09, 2023
aenmd: annotating escape from nonsense-mediated decay for transcripts with protein-truncating variants.

Jonathan Klonowski, Qianqian Liang, Zeynep Coban-Akdemir

|Jun 30, 2023
An intrinsically interpretable neural network architecture for sequence-to-function learning.

Ali Tuğrul Balcı, Mark Maher Ebeid, Panayiotis V Benos

|Dec 27, 2022
Single-cell transcriptomic analysis identifies murine heart molecular features at embryonic and neonatal stages.

Wei Feng, Abha Bais, Haoting He

|Nov 07, 2022
Vaeda computationally annotates doublets in single-cell RNA sequencing data.

Hannah Schriever, Dennis Kostka

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Frequent Collaborators

2 joint publications

Guang Li

2 joint publications

Wei Feng

2 joint publications

Abha Bais

1 joint publications

Nathan Clark