William E Fondrie

15PUBLICATIONS
49CO-AUTHORS
Satisfiability and optimisationDeep learningGenome structure and regulationEmpirical software engineeringProteomics and metabolomics
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Publications (15)

|Apr 10, 2026
Carafe2 enables high quality in silico spectral library generation for timsTOF data-independent acquisition proteomics.

Bo Wen, J Sebastian Paez, Chris Hsu

|Dec 30, 2025
Improvements to Casanovo, a Deep Learning De Novo Peptide Sequencer.

Gwenneth Straub, Varun Ananth, William E Fondrie

|Jun 12, 2025
A haplotype-resolved view of human gene regulation.

Mitchell R Vollger, Elliott G Swanson, Shane J Neph

|Apr 23, 2025
Open-Source and FAIR Research Software for Proteomics.

Yasset Perez-Riverol, Wout Bittremieux, William S Noble

|Aug 30, 2024
Accounting for Digestion Enzyme Bias in Casanovo.

Carlo Melendez, Justin Sanders, Melih Yilmaz

|Oct 20, 2023
Evaluating Proteomics Imputation Methods with Improved Criteria.

Lincoln Harris, William E Fondrie, Sewoong Oh

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Frequent Collaborators

10 joint publications

William Stafford Noble

5 joint publications

Wout Bittremieux

5 joint publications

Michael J MacCoss

2 joint publications

Jimmy K Eng