Handuo Shi

16PUBLICATIONS
68CO-AUTHORS
PharmacogenomicsGene expression (incl. microarray and other genome-wide approaches)Microbial geneticsBacteriologySurface water quality processes and contaminated sediment assessment
Featured researcher

Get your video featured.

JoVEPublish with JoVE
Journal

Publications (16)

|Aug 20, 2026
Capsular polysaccharide can sensitize bacteria to non-antibiotic drugs.

|Jun 04, 2026
CUPID-seq enables highly multiplexed amplicon sequencing via combinatorial in-line dual indexing.

|Jun 04, 2026
Path-dependent recovery of the gut microbiome after antibiotics emerges from coupled ecological and evolutionary dynamics.

|May 25, 2026
Phage-based microbiome manipulation reveals ecological interactions within gut communities.

|Dec 22, 2025
Sensing the shape of a surface by tightly surface-bound filaments.

Handuo Shi, Jeffrey Nguyen, Jordan Alexander Huang

|Sep 03, 2025
Bacterial cell widening alters periplasmic size and activates envelope stress responses.

Matylda Zietek, Amanda Miguel, Handuo Shi

Pageof 3

Frequent Collaborators

14 joint publications

Kerwyn Casey Huang

3 joint publications

David A Relman

2 joint publications

Jamie A Lopez

2 joint publications

Benjamin P Bratton