Handuo Shi

17PUBLICATIONS
73CO-AUTHORS
Respiratory diseasesPharmacogenomicsGene expression (incl. microarray and other genome-wide approaches)Microbial geneticsBacteriology
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Publications (17)

|Sep 24, 2026
Gut microbiome shifts in chronic systolic heart failure are associated with disease severity and clinical improvement.

|Aug 20, 2026
Capsular polysaccharide can sensitize bacteria to non-antibiotic drugs.

|Jun 04, 2026
CUPID-seq enables highly multiplexed amplicon sequencing via combinatorial in-line dual indexing.

|Jun 04, 2026
Path-dependent recovery of the gut microbiome after antibiotics emerges from coupled ecological and evolutionary dynamics.

|May 25, 2026
Phage-based microbiome manipulation reveals ecological interactions within gut communities.

|Dec 22, 2025
Sensing the shape of a surface by tightly surface-bound filaments.

Handuo Shi, Jeffrey Nguyen, Jordan Alexander Huang

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Frequent Collaborators

15 joint publications

Kerwyn Casey Huang

3 joint publications

David A Relman

2 joint publications

Jamie A Lopez

2 joint publications

Benjamin P Bratton