Handuo Shi

15PUBLICATIONS

56CO-AUTHORS

Gene expression (incl. microarray and other genome-wide approaches)Microbial geneticsBacteriologySurface water quality processes and contaminated sediment assessmentMedical virology

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Publications (15)

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|Jun 04, 2026

CUPID-seq enables highly multiplexed amplicon sequencing via combinatorial in-line dual indexing.

|Jun 04, 2026

Path-dependent recovery of the gut microbiome after antibiotics emerges from coupled ecological and evolutionary dynamics.

|May 25, 2026

Phage-based microbiome manipulation reveals ecological interactions within gut communities.

|Dec 22, 2025

Sensing the shape of a surface by tightly surface-bound filaments.

Handuo Shi, Jeffrey Nguyen, Jordan Alexander Huang

|Sep 03, 2025

Bacterial cell widening alters periplasmic size and activates envelope stress responses.

Matylda Zietek, Amanda Miguel, Handuo Shi

|Nov 28, 2024

Sensing the shape of a surface by intracellular filaments.

Handuo Shi, Jeffrey Nguyen, Zemer Gitai

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Frequent Collaborators

13 joint publications

Kerwyn Casey Huang

David A Relman

Jamie A Lopez

Benjamin P Bratton

Benjamin H Good

Gregory Grason

Justin Sonnenburg

Ajay Gopinathan

Joshua Shaevitz

Taylor H Nguyen

Frequent Collaborators

13 joint publications

Kerwyn Casey Huang

3 joint publications

David A Relman

2 joint publications

Jamie A Lopez

2 joint publications

Benjamin P Bratton