Michael Shaffer

7PUBLICATIONS
31CO-AUTHORS
Fish pests and diseasesFood properties (incl. characteristics and health benefits)Fish physiology and geneticsMicrobial geneticsSurface water quality processes and contaminated sediment assessment
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Publications (7)

|Oct 07, 2024
Time-Resolved Multiomics Illustrates Host and Gut Microbe Interactions during Salmonella Infection.

Yongseok Kim, Katherine Kokkinias, Anice Sabag-Daigle

|Feb 14, 2024
Time resolved multi-omics reveals diverse metabolic strategies of Salmonella during diet-induced inflammation.

Katherine Kokkinias, Anice Sabag-Daigle, Yongseok Kim

|Jan 31, 2024
Gut microbiome carbon and sulfur metabolisms support Salmonella during pathogen infection.

Ikaia Leleiwi, Katherine Kokkinias, Yongseok Kim

|May 20, 2023
Exposing new taxonomic variation with inflammation - a murine model-specific genome database for gut microbiome researchers.

Ikaia Leleiwi, Josué Rodriguez-Ramos, Michael Shaffer

|Mar 01, 2023
kb_DRAM: annotation and metabolic profiling of genomes with DRAM in KBase.

Michael Shaffer, Mikayla A Borton, Ben Bolduc

|Jul 21, 2022
Genome-Resolved Metaproteomics Decodes the Microbial and Viral Contributions to Coupled Carbon and Nitrogen Cycling in River Sediments.

Josué A Rodríguez-Ramos, Mikayla A Borton, Bridget B McGivern

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Frequent Collaborators

4 joint publications

Brian M M Ahmer

4 joint publications

Mikayla A Borton

4 joint publications

Kelly C Wrighton

4 joint publications

Rebecca A Daly