Benjamin P Berman

16PUBLICATIONS
57CO-AUTHORS
Predictive and prognostic markersEpigenetics (incl. genome methylation and epigenomics)Regenerative medicine (incl. stem cells)Cancer geneticsGene expression (incl. microarray and other genome-wide approaches)
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Publications (16)

|Jul 21, 2026
Direct analysis of transcription factor protected cfDNA in plasma by ChIP-seq: measurement of altered CTCF binding in cancer is a novel biomarker for liquid biopsy.

|Jun 10, 2024
CelFiE-ISH: a probabilistic model for multi-cell type deconvolution from single-molecule DNA methylation haplotypes.

Irene Unterman, Dana Avrahami, Efrat Katsman

|Feb 27, 2024
BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studies.

Wanding Zhou, Benjamin K Johnson, Jacob Morrison

|Dec 19, 2022
Muscle injury causes long-term changes in stem-cell DNA methylation.

Tal Falick Michaeli, Ofra Sabag, Rimma Fok

|Jul 15, 2022
Detecting cell-of-origin and cancer-specific methylation features of cell-free DNA from Nanopore sequencing.

Efrat Katsman, Shari Orlanski, Filippo Martignano

|Aug 09, 2021
Activation of bivalent factor DLX5 cooperates with master regulator TP63 to promote squamous cell carcinoma.

Yongsheng Huang, Qian Yang, Yueyuan Zheng

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Frequent Collaborators

3 joint publications

Nicole Gull

3 joint publications

Peter W Laird

3 joint publications

Li-Yan Xu

3 joint publications

H Phillip Koeffler