Tsu-Pei Chiu

10PUBLICATIONS
28CO-AUTHORS
Fluid-structure interaction and aeroacousticsDeep learningChemical engineering designFormal methods for softwareSequence analysis
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Publications (10)

|Oct 15, 2026
DNA breathing and shape encode distinct mechanisms of transcription factor binding.

|Mar 09, 2026
Sequence-based modeling of low-affinity transcription factor-DNA binding through deep learning.

Yingfei Wang, Jinsen Li, Tsu-Pei Chiu

|Jan 07, 2026
Quantitative modulation of a spatial enhancer through the biophysical properties of a transcription factor binding site.

Conrad Fallon, Liucong Ling, Brendon H Cooper

|Feb 03, 2025
Contribution of DNA breathing to physical interactions with transcription factors.

Waqaas Butt, Ben Lai, Tsu-Pei Chiu

|Feb 01, 2025
DNAdesign: feature-aware in silico design of synthetic DNA through mutation.

Yingfei Wang, Jinsen Li, Tsu-Pei Chiu

|Aug 05, 2024
Geometric deep learning of protein-DNA binding specificity.

Raktim Mitra, Jinsen Li, Jared M Sagendorf

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Frequent Collaborators

10 joint publications

Remo Rohs

6 joint publications

Jinsen Li

3 joint publications

Raktim Mitra

2 joint publications

Yibei Jiang