Muhammad Shamim

7PUBLICATIONS

68CO-AUTHORS

Carbon capture engineering (excl. sequestration)Genome structure and regulationEpigenetics (incl. genome methylation and epigenomics)Genomics

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Publications (7)

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|Oct 30, 2026

Quantitative changes in 3D contact predict changes in enhancer-promoter regulation upon cohesin depletion.

|Jul 15, 2026

An encyclopedia of human enhancer-gene regulatory interactions.

|Nov 28, 2023

An encyclopedia of enhancer-gene regulatory interactions in the human genome.

Andreas R Gschwind, Kristy S Mualim, Alireza Karbalayghareh

|Jul 28, 2023

The ENCODE Uniform Analysis Pipelines.

Benjamin C Hitz, Jin-Wook Lee, Otto Jolanki

|Feb 13, 2021

CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions.

Anjali Kaushal, Giriram Mohana, Julien Dorier

|Jul 11, 2018

Genetic determinants of co-accessible chromatin regions in activated T cells across humans.

Rachel E Gate, Christine S Cheng, Aviva P Aiden

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Frequent Collaborators

Benjamin R Doughty

Michael A Beer

Lars M Steinmetz

Erez Lieberman Aiden

Andreas R Gschwind

Jesse M Engreitz

Neva C Durand

Anshul Kundaje

Zhiping Weng

Kaili Fan

Frequent Collaborators

Benjamin R Doughty

Michael A Beer

Lars M Steinmetz

Erez Lieberman Aiden