Muhammad Shamim

6PUBLICATIONS

64CO-AUTHORS

Genome structure and regulationEpigenetics (incl. genome methylation and epigenomics)Genomics

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Publications (6)

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|Jul 15, 2026

An encyclopedia of human enhancer-gene regulatory interactions.

|Nov 28, 2023

An encyclopedia of enhancer-gene regulatory interactions in the human genome.

Andreas R Gschwind, Kristy S Mualim, Alireza Karbalayghareh

|Jul 28, 2023

The ENCODE Uniform Analysis Pipelines.

Benjamin C Hitz, Jin-Wook Lee, Otto Jolanki

|Feb 13, 2021

CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions.

Anjali Kaushal, Giriram Mohana, Julien Dorier

|Jul 11, 2018

Genetic determinants of co-accessible chromatin regions in activated T cells across humans.

Rachel E Gate, Christine S Cheng, Aviva P Aiden

|Mar 25, 2017

De novo assembly of the <i>Aedes aegypti</i> genome using Hi-C yields chromosome-length scaffolds.

Olga Dudchenko, Sanjit S Batra, Arina D Omer

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Frequent Collaborators

Michael A Beer

Anshul Kundaje

Neva C Durand

Benjamin R Doughty

Zhiping Weng

Kaili Fan

Erez Lieberman Aiden

Andreas R Gschwind

Hank Jones

David Yao

Frequent Collaborators

Michael A Beer

Anshul Kundaje

Neva C Durand

Benjamin R Doughty