Search research articles

ABOUT JoVE

Overview Leadership Blog JoVE Help Center

AUTHORS

Publishing Process Editorial Board Scope & Policies Peer Review FAQ Submit

LIBRARIANS

Testimonials Subscriptions Access Resources Library Advisory Board FAQ

RESEARCH

JoVE Journal Methods Collections JoVE Encyclopedia of Experiments Archive

EDUCATION

JoVE Core JoVE Business JoVE Science Education JoVE Lab Manual Faculty Resource Center Faculty Site

Terms & Conditions of Use

Muhammad Shamim

5PUBLICATIONS

50CO-AUTHORS

Epigenetics (incl. genome methylation and epigenomics)Genome structure and regulationGenomics

Featured researcher

Get your video featured.

Publish with JoVE

Featured researcher

Get your video featured.

Publish with JoVE

Publications (5)

Sort by Publication Date:

|Nov 28, 2023

An encyclopedia of enhancer-gene regulatory interactions in the human genome.

Andreas R Gschwind, Kristy S Mualim, Alireza Karbalayghareh

|Jul 28, 2023

The ENCODE Uniform Analysis Pipelines.

Benjamin C Hitz, Jin-Wook Lee, Otto Jolanki

|Feb 13, 2021

CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions.

Anjali Kaushal, Giriram Mohana, Julien Dorier

|Jul 11, 2018

Genetic determinants of co-accessible chromatin regions in activated T cells across humans.

Rachel E Gate, Christine S Cheng, Aviva P Aiden

|Mar 25, 2017

De novo assembly of the <i>Aedes aegypti</i> genome using Hi-C yields chromosome-length scaffolds.

Olga Dudchenko, Sanjit S Batra, Arina D Omer

Pageof 1

Frequent Collaborators

2 joint publications

Anshul Kundaje

2 joint publications

Michael A Beer

2 joint publications

Neva C Durand

1 joint publications

Chun J Ye

1 joint publications

Marie Hoeger

1 joint publications

Ido Machol

1 joint publications

Eric S Lander

1 joint publications

Aviva Presser Aiden

1 joint publications

Erez Lieberman Aiden

1 joint publications

Hank Jones

Frequent Collaborators

2 joint publications

Anshul Kundaje

2 joint publications

Michael A Beer

2 joint publications

Neva C Durand

1 joint publications

Chun J Ye

Top Related Videos

A Web-Based Workflow for Selecting Gene- and Tissue-Specific Enhancers

A Web-Based Workflow for Selecting Gene- and Tissue-Specific Enhancers

Published on : Jul 18, 2025

Introductory Analysis and Validation of CUT&RUN Sequencing Data

Introductory Analysis and Validation of CUT&RUN Sequencing Data

Published on : Dec 13, 2024

<em>HOX</em> Loci Focused CRISPR/sgRNA Library Screening Identifying Critical CTCF Boundaries

<em>HOX</em> Loci Focused CRISPR/sgRNA Library Screening Identifying Critical CTCF Boundaries

Published on : Mar 31, 2019

See more related videos

Top Related Videos

A Web-Based Workflow for Selecting Gene- and Tissue-Specific Enhancers

A Web-Based Workflow for Selecting Gene- and Tissue-Specific Enhancers

Published on : Jul 18, 2025

Introductory Analysis and Validation of CUT&RUN Sequencing Data

Introductory Analysis and Validation of CUT&RUN Sequencing Data

Published on : Dec 13, 2024

<em>HOX</em> Loci Focused CRISPR/sgRNA Library Screening Identifying Critical CTCF Boundaries

<em>HOX</em> Loci Focused CRISPR/sgRNA Library Screening Identifying Critical CTCF Boundaries

Published on : Mar 31, 2019

See more related videos