Jonathan R Karr

6PUBLICATIONS
67CO-AUTHORS
Bioinformatics and computational biology not elsewhere classifiedBioinformatic methods developmentFormal methods for softwareSimulation, modelling, and programming of mechatronics systems
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Publications (6)

|Dec 04, 2025
Verification and reproducible curation of the BioModels repository.

Lucian P Smith, Rahuman S Malik-Sheriff, Tung V N Nguyen

|Feb 03, 2025
Verification and reproducible curation of the BioModels repository.

Lucian Smith, Rahuman S Malik-Sheriff, Tung V N Nguyen

|Apr 13, 2024
The simulation experiment description markup language (SED-ML): language specification for level 1 version 5.

Lucian P Smith, Frank T Bergmann, Alan Garny

|May 07, 2022
BioSimulators: a central registry of simulation engines and services for recommending specific tools.

Bilal Shaikh, Lucian P Smith, Dan Vasilescu

|May 21, 2021
RunBioSimulations: an extensible web application that simulates a wide range of computational modeling frameworks, algorithms, and formats.

Bilal Shaikh, Gnaneswara Marupilla, Mike Wilson

|Feb 06, 2020
Organizing genome engineering for the gigabase scale.

Bryan A Bartley, Jacob Beal, Jonathan R Karr

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Frequent Collaborators

4 joint publications

Lucian Smith

4 joint publications

David P Nickerson

4 joint publications

Herbert Sauro

3 joint publications

Bilal Shaikh