Shaun Mahony

22PUBLICATIONS
60CO-AUTHORS
Deep learningSoftware quality, processes and metricsEpigenetics (incl. genome methylation and epigenomics)Genome structure and regulationGene expression (incl. microarray and other genome-wide approaches)
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Publications (22)

|Feb 09, 2026
TPCAV: Interpreting deep learning genomics models via concept attribution.

Jianyu Yang, Shaun Mahony

|Nov 09, 2025
Optimized ChIP-exo for mammalian cells and patterned sequencing flow cells.

Daniela Q James, Sohini Mukherjee, C Caiden Cannon

|Sep 05, 2025
Chromatin state dynamics during the <i>Plasmodium falciparum</i> intraerythrocytic development cycle.

Alan S Brown, Manuel Llinás, Shaun Mahony

|Sep 02, 2025
Optimized ChIP-exo for mammalian cells and patterned sequencing flow cells.

Daniela Q James, Sohini Mukherjee, C Caiden Cannon

|Jul 08, 2025
Perspective on recent developments and challenges in regulatory and systems genomics.

Julia Zeitlinger, Sushmita Roy, Ferhat Ay

|Sep 24, 2024
Human CCR4-NOT globally regulates gene expression and is a novel silencer of retrotransposon activation.

Shardul Kulkarni, Alexis Morrissey, Aswathy Sebastian

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Frequent Collaborators

4 joint publications

Ross C Hardison

4 joint publications

Cheryl A Keller

3 joint publications

Esteban O Mazzoni

3 joint publications

Guanjue Xiang