Nathan Raabe

10PUBLICATIONS

23CO-AUTHORS

Medical bacteriologySurface water quality processes and contaminated sediment assessmentGene mappingEpigenetics (incl. genome methylation and epigenomics)Genomics and transcriptomics

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Publications (10)

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|Jun 04, 2026

Genomic epidemiology and transmission dynamics of plasmids carrying New Delhi metallo-β-lactamase ( <i>bla</i> <sub>NDM</sub> ) at a single hospital system over five years.

|May 27, 2026

Genomic Epidemiology of Antibiotic-Resistant Bacteria Sampled from Metropolitan Wastewater.

|Apr 27, 2026

Whole genome sequencing to study SARS-CoV-2 transmission between university students and the surrounding community in Pittsburgh, Pennsylvania, 2020-2021.

|Nov 24, 2025

ACCIO: An Assembly-Based Tool Enabling Plasmid Detection.

Nathan J Raabe, Marissa P Griffith, Vatsala Rangachar Srinivasa

|Nov 24, 2025

Whole Genome Sequencing to Study SARS-CoV-2 Transmission between University Students and the Surrounding Community in Pittsburgh, Pennsylvania, 2020-2021.

Vatsala Rangachar Srinivasa, Marissa P Griffith, Kathleen A Shutt

|Nov 24, 2025

Methods for cost-efficient, whole genome sequencing surveillance for enhanced detection of outbreaks in a hospital setting.

Kady D Waggle, Marissa Pacey Griffith, Alecia B Rokes

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Frequent Collaborators

Daria Van Tyne

Graham M Snyder

Lee H Harrison

Alexander Sundermann

Vatsala Rangachar Srinivasa

5 joint publications

Hunter Coyle

5 joint publications

Lora Lee Pless

4 joint publications

Marissa Pacey Griffith

4 joint publications

Kady D Waggle

3 joint publications

Kathleen Shutt

Frequent Collaborators

Daria Van Tyne

Graham M Snyder

Lee H Harrison

Alexander Sundermann