Jeffrey A Ruffolo
10PUBLICATIONS
24CO-AUTHORS
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Publications (10)
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|Feb 02, 2026
Customizing CRISPR-Cas PAM specificity with protein language models.Stephen Nayfach, Aadyot Bhatnagar, Andrey Novichkov
|Jul 31, 2025
Design of highly functional genome editors by modelling CRISPR-Cas sequences.Jeffrey A Ruffolo, Stephen Nayfach, Joseph Gallagher
|Jan 20, 2025
Engineering of CRISPR-Cas PAM recognition using deep learning of vast evolutionary data.Stephen Nayfach, Aadyot Bhatnagar, Andrey Novichkov
|Jun 20, 2024
Toward enhancement of antibody thermostability and affinity by computational design in the absence of antigen.Mark Hutchinson, Jeffrey A Ruffolo, Nantaporn Haskins
|May 15, 2023
Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies.Jeffrey A Ruffolo, Lee-Shin Chu, Sai Pooja Mahajan
|Jun 15, 2022
Simultaneous prediction of antibody backbone and side-chain conformations with deep learning.Deniz Akpinaroglu, Jeffrey A Ruffolo, Sai Pooja Mahajan
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Frequent Collaborators
3 joint publications
Ali Madani
3 joint publications
Jeffrey J Gray
2 joint publications
Alexander J Meeske
2 joint publications
Benjamin P Kleinstiver
2 joint publications
Stephen Nayfach
1 joint publications
Laura Spector
1 joint publications
Wei Wang
1 joint publications
Pietro Sormanni
1 joint publications
Monica L Fernández-Quintero
1 joint publications
Olivia M Swanson
