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Jonathan Monk

15PUBLICATIONS

36CO-AUTHORS

Epigenetics (incl. genome methylation and epigenomics)Microbial taxonomyGenomics and transcriptomicsGene expression (incl. microarray and other genome-wide approaches)Genome structure and regulation

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Publications (15)

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|Dec 15, 2025

Structure of the <i>Enterobacter</i> pan-genome is revealed using machine learning.

Joshua T Burrows, Gaoyuan Li, Jonathan M Monk

|Dec 12, 2025

A metabolic atlas of the Klebsiella pneumoniae species complex reveals lineage-specific metabolism and capacity for intra-species co-operation.

Ben Vezina, Helena B Cooper, Christopher K Barlow

|Nov 24, 2023

Global pathogenomic analysis identifies known and candidate genetic antimicrobial resistance determinants in twelve species.

Jason C Hyun, Jonathan M Monk, Richard Szubin

|Apr 03, 2023

Whole-genome sequences from wild-type and laboratory-evolved strains define the alleleome and establish its hallmarks.

Edward Alexander Catoiu, Patrick Phaneuf, Jonathan Monk

|Aug 22, 2022

Genome-scale metabolic network reconstructions of diverse <i>Escherichia</i> strains reveal strain-specific adaptations.

Jonathan M Monk

|May 20, 2022

Transmission of Klebsiella strains and plasmids within and between grey-headed flying fox colonies.

Ben Vezina, Louise M Judd, Fiona K McDougall

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Frequent Collaborators

10 joint publications

Bernhard Palsson

4 joint publications

Kathryn E Holt

3 joint publications

Sylvain Brisse

3 joint publications

Kelly L Wyres

3 joint publications

Ben Vezina

3 joint publications

Jane Hawkey

2 joint publications

Louise M Judd

2 joint publications

Erol S Kavvas

2 joint publications

Firas S Midani

2 joint publications

Heather A Danhof

Frequent Collaborators

10 joint publications

Bernhard Palsson

4 joint publications

Kathryn E Holt

3 joint publications

Sylvain Brisse

3 joint publications

Kelly L Wyres

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