Marc S Halfon

20PUBLICATIONS

41CO-AUTHORS

Genome structure and regulationDeep learningEvolution of developmental systemsAutomated software engineeringGene expression (incl. microarray and other genome-wide approaches)

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Publications (20)

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|Jul 23, 2026

Toward standardization in arthropod and biodiversity genome projects.

|Nov 13, 2025

EnhancerMatcher: comparing cell-type-specific enhancer activity of DNA sequences using deep convolutional neural networks and explainable AI.

Luis M Solis, William L Melendez, Shantanu H Fuke

|Sep 04, 2025

Redundant and Singular Regulatory Elements Underlie the Rapidly Evolving Pigmentation of Drosophila.

Logan A Brubaker, Hayley Long, Allison Pavlus

|Jun 12, 2025

EnhancerDetector : Enhancer Discovery from Human to Fly via Interpretable Deep Learning.

Luis M Solis, Geyenna Sterling-Lentsch, Marc S Halfon

|Dec 05, 2024

SCRMshaw: Supervised cis-regulatory module prediction for insect genomes.

Hasiba Asma, Luna Liu, Marc S Halfon

|Oct 11, 2024

Regulatory genome annotation of 33 insect species.

Hasiba Asma, Ellen Tieke, Kevin D Deem

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Frequent Collaborators

Hasiba Asma

Yoshinori Tomoyasu

Henry D Mawejje

Alistair Miles

Sanjay C Nagi

Chris S Clarkson

Eric R Lucas

Jon H Brenas

Naomi A Dyer

Thomas M Williams

Frequent Collaborators

Hasiba Asma

Yoshinori Tomoyasu

Henry D Mawejje

Alistair Miles