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Marc S Halfon

19PUBLICATIONS
26CO-AUTHORS
Deep learningEvolution of developmental systemsAutomated software engineeringGene expression (incl. microarray and other genome-wide approaches)Epigenetics (incl. genome methylation and epigenomics)
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Journal

Publications (19)

Sort by Publication Date:
|Nov 13, 2025
EnhancerMatcher: comparing cell-type-specific enhancer activity of DNA sequences using deep convolutional neural networks and explainable AI.

Luis M Solis, William L Melendez, Shantanu H Fuke

|Sep 04, 2025
Redundant and Singular Regulatory Elements Underlie the Rapidly Evolving Pigmentation of Drosophila.

Logan A Brubaker, Hayley Long, Allison Pavlus

|Jun 12, 2025
<i>EnhancerDetector</i> : Enhancer Discovery from Human to Fly via Interpretable Deep Learning.

Luis M Solis, Geyenna Sterling-Lentsch, Marc S Halfon

|Dec 05, 2024
SCRMshaw: Supervised cis-regulatory module prediction for insect genomes.

Hasiba Asma, Luna Liu, Marc S Halfon

|Oct 11, 2024
Regulatory genome annotation of 33 insect species.

Hasiba Asma, Ellen Tieke, Kevin D Deem

|Sep 17, 2024
Mechanisms of transcriptional regulation in <i>Anopheles gambiae</i> revealed by allele-specific expression.

Naomi A Dyer, Eric R Lucas, Sanjay C Nagi

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Frequent Collaborators

4 joint publications

Hasiba Asma

2 joint publications

Yoshinori Tomoyasu

2 joint publications

Henry D Mawejje

2 joint publications

Alistair Miles

2 joint publications

Sanjay C Nagi

2 joint publications

Chris S Clarkson

2 joint publications

Eric R Lucas

2 joint publications

Jon H Brenas

2 joint publications

Naomi A Dyer

2 joint publications

Thomas M Williams

Frequent Collaborators

4 joint publications

Hasiba Asma

2 joint publications

Yoshinori Tomoyasu

2 joint publications

Henry D Mawejje

2 joint publications

Alistair Miles

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