José María Fernández

11PUBLICATIONS
172CO-AUTHORS
Genomics and transcriptomicsInformation extraction and fusionQuery processing and optimisationSoftware testing, verification and validationGene expression (incl. microarray and other genome-wide approaches)
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Publications (11)

|Aug 15, 2025
FANTASIA leverages language models to decode the functional dark proteome across the animal tree of life.

Gemma I Martínez-Redondo, Francisco M Perez-Canales, Belén Carbonetto

|May 21, 2025
WorkflowHub: a registry for computational workflows.

Ove Johan Ragnar Gustafsson, Sean R Wilkinson, Finn Bacall

|Sep 10, 2024
Recording provenance of workflow runs with RO-Crate.

Simone Leo, Michael R Crusoe, Laura Rodríguez-Navas

|Jun 07, 2024
Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.

Francisco J Pardo-Palacios, Dingjie Wang, Fairlie Reese

|Dec 01, 2023
WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows.

David Bouyssié, Pınar Altıner, Salvador Capella-Gutierrez

|Aug 11, 2023
DEBBIE: The Open Access Database of Experimental Scaffolds and Biomaterials Built Using an Automated Text Mining Pipeline.

Javier O Corvi, Austin McKitrick, José M Fernández

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Frequent Collaborators

8 joint publications

Salvador Capella-Gutierrez

2 joint publications

Jon Sánchez-Valle

2 joint publications

Javier O Corvi

2 joint publications

Stian Soiland-Reyes