James J Collins

65PUBLICATIONS
245CO-AUTHORS
Deep learningMolecular targetsMicrobial geneticsCheminformatics and quantitative structure-activity relationshipsMedical molecular engineering of nucleic acids and proteins
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Publications (65)

|Jun 17, 2026
Deep learning-enabled discovery of antibiotics effective against <i>Neisseria gonorrhoeae</i>.

|Feb 19, 2026
FATE-MAP predicts teratogenicity and human gastrulation failure modes by integrating deep learning and mechanistic modeling.

Joseph Rufo, Chongxu Qiu, Dasol Han

|Jan 14, 2026
Digital CRISPR-based diagnostics for quantification of Candida auris and resistance mutations.

Justin C Rolando, Anton Thieme, Nicole E Weckman

|Oct 23, 2025
Active learning framework leveraging transcriptomics identifies modulators of disease phenotypes.

Benjamin DeMeo, Charlotte Nesbitt, Samuel A Miller

|Oct 02, 2025
Convergence of nanotechnology and CRISPR-based diagnostics.

Midori Johnston, Schan Dissanayake-Perera, James J Collins

|Jan 24, 2025
Machine learning for antimicrobial peptide identification and design.

Fangping Wan, Felix Wong, James J Collins

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Frequent Collaborators

8 joint publications

Peter Q Nguyen

6 joint publications

Aarti Krishnan

5 joint publications

Luis R Soenksen

5 joint publications

Felix Wong