Willem Waegeman

7PUBLICATIONS
13CO-AUTHORS
Semi- and unsupervised learningComputational chemistryCheminformatics and quantitative structure-activity relationshipsEvolutionary computationMedical bacteriology
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Publications (7)

|Aug 21, 2026
A systematic assessment of single-cell language model configurations.

|May 11, 2026
Reliable Molecular Retrieval from Mass Spectra Using Conformal Prediction.

|Jun 30, 2025
Enhancing Drug-Target Interaction Prediction through Transfer Learning from Activity Cliff Prediction Tasks.

Regina Ibragimova, Dimitrios Iliadis, Willem Waegeman

|Mar 05, 2024
Uncertainty-aware single-cell annotation with a hierarchical reject option.

Lauren Theunissen, Thomas Mortier, Yvan Saeys

|Oct 31, 2021
CpG Transformer for imputation of single-cell methylomes.

Gaetan De Waele, Jim Clauwaert, Gerben Menschaert

|Apr 25, 2020
Fast Pathogen Identification Using Single-Cell Matrix-Assisted Laser Desorption/Ionization-Aerosol Time-of-Flight Mass Spectrometry Data and Deep Learning Methods.

Christina Papagiannopoulou, René Parchen, Peter Rubbens

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Frequent Collaborators

3 joint publications

Gaetan De Waele

1 joint publications

Peter Rubbens

1 joint publications

Marian L Schmidt

1 joint publications

Ruben Props