Bernardo P de Almeida
6PUBLICATIONS
12CO-AUTHORS
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Publications (6)
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|Oct 30, 2025
Annotating the genome at single-nucleotide resolution with DNA foundation models.Bernardo P de Almeida, Hugo Dalla-Torre, Guillaume Richard
|Nov 28, 2024
Nucleotide Transformer: building and evaluating robust foundation models for human genomics.Hugo Dalla-Torre, Liam Gonzalez, Javier Mendoza-Revilla
|Aug 30, 2024
Are genomic language models all you need? Exploring genomic language models on protein downstream tasks.Sam Boshar, Evan Trop, Bernardo P de Almeida
|Mar 20, 2023
Enhancers display constrained sequence flexibility and context-specific modulation of motif function.Franziska Reiter, Bernardo P de Almeida, Alexander Stark
|May 13, 2022
DeepSTARR predicts enhancer activity from DNA sequence and enables the de novo design of synthetic enhancers.Bernardo P de Almeida, Franziska Reiter, Michaela Pagani
|Mar 12, 2019
Pan-cancer association of a centrosome amplification gene expression signature with genomic alterations and clinical outcome.Bernardo P de Almeida, André F Vieira, Joana Paredes
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Frequent Collaborators
2 joint publications
Alexander Stark
2 joint publications
Thomas Pierrot
1 joint publications
André F Vieira
1 joint publications
Nuno L Barbosa-Morais
1 joint publications
Christian Dallago
1 joint publications
Marcin Skwark
1 joint publications
Marie Lopez
1 joint publications
Maxence Gélard
1 joint publications
Ziqi Tang
1 joint publications
David M Emms
