Can Firtina

7PUBLICATIONS
23CO-AUTHORS
Gene expression (incl. microarray and other genome-wide approaches)Sequence analysisFormal methods for softwareMicroelectronicsInformation retrieval and web search
Featured researcher

Get your video featured.

JoVEPublish with JoVE
Journal

Publications (7)

|Aug 22, 2026
De Bruijn graphs for pangenomics: in-depth performance benchmarking of de Bruijn graph-based tools for read mapping.

|Jul 30, 2024
RawHash2: mapping raw nanopore signals using hash-based seeding and adaptive quantization.

Can Firtina, Melina Soysal, Joël Lindegger

|Apr 02, 2024
Packaging and containerization of computational methods.

Mohammed Alser, Brendan Lawlor, Richard J Abdill

|Feb 16, 2024
RUBICON: a framework for designing efficient deep learning-based genomic basecallers.

Gagandeep Singh, Mohammed Alser, Kristof Denolf

|Jun 30, 2023
RawHash: enabling fast and accurate real-time analysis of raw nanopore signals for large genomes.

Can Firtina, Nika Mansouri Ghiasi, Joel Lindegger

|Jan 23, 2023
BLEND: a fast, memory-efficient and accurate mechanism to find fuzzy seed matches in genome analysis.

Can Firtina, Jisung Park, Mohammed Alser

Pageof 2

Frequent Collaborators

4 joint publications

Onur Mutlu

3 joint publications

Can Alkan

2 joint publications

Jeremie S Kim

2 joint publications

Joel Lindegger