Daniel Blankenberg

25PUBLICATIONS
119CO-AUTHORS
Microbial geneticsGenomics and transcriptomicsDeep learningProteomics and intermolecular interactions (excl. medical proteomics)Cheminformatics and quantitative structure-activity relationships
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Publications (25)

|Aug 13, 2026
Characterization of microbial dark matter at scale with MetaSBT and taxonomy-aware Sequence Bloom Trees.

|May 18, 2026
A novel Vector-Symbolic Architecture for graph encoding and its application to viral pangenome-based species classification.

|Sep 05, 2025
Characterization of microbial dark matter at scale with MetaSBT and taxonomy-aware Sequence Bloom Trees.

Fabio Cumbo, Daniel Blankenberg

|Jul 17, 2025
Large-scale classification of metagenomic samples: a comparative analysis of classical machine learning techniques vs a novel brain-inspired hyperdimensional computing approach.

Jayadev Joshi, Fabio Cumbo, Daniel Blankenberg

|May 12, 2025
DICED (Database of Identified Cleavage Sites Endemic to Diseases States): A Searchable Web Interface for Terminomics/Degradomics.

Jayadev Joshi, Sumit Bhutada, Daniel R Martin

|Jan 07, 2025
Microbiology Galaxy Lab: The first community-driven gateway for reproducible and FAIR analysis of microbial data.

Engy Nasr, Nikos Pechlivanis, Nikolaos Strepis

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Frequent Collaborators

8 joint publications

Fabio Cumbo

4 joint publications

Björn Grüning

3 joint publications

Bérénice Batut

3 joint publications

Peter van Heusden