Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Daniel Blankenberg

24PUBLICATIONS
119CO-AUTHORS
Genomics and transcriptomicsMicrobial geneticsDeep learningProteomics and intermolecular interactions (excl. medical proteomics)Cheminformatics and quantitative structure-activity relationships
Featured researcher

Get your video featured.

JoVEPublish with JoVE
Featured researcher

Get your video featured.

JoVEPublish with JoVE
Journal

Publications (24)

Sort by Publication Date:
|May 18, 2026
A novel Vector-Symbolic Architecture for graph encoding and its application to viral pangenome-based species classification.

|Sep 05, 2025
Characterization of microbial dark matter at scale with MetaSBT and taxonomy-aware Sequence Bloom Trees.

Fabio Cumbo, Daniel Blankenberg

|Jul 17, 2025
Large-scale classification of metagenomic samples: a comparative analysis of classical machine learning techniques vs a novel brain-inspired hyperdimensional computing approach.

Jayadev Joshi, Fabio Cumbo, Daniel Blankenberg

|May 12, 2025
DICED (Database of Identified Cleavage Sites Endemic to Diseases States): A Searchable Web Interface for Terminomics/Degradomics.

Jayadev Joshi, Sumit Bhutada, Daniel R Martin

|Jan 07, 2025
Microbiology Galaxy Lab: The first community-driven gateway for reproducible and FAIR analysis of microbial data.

Engy Nasr, Nikos Pechlivanis, Nikolaos Strepis

|Nov 28, 2024
Feature selection with vector-symbolic architectures: a case study on microbial profiles of shotgun metagenomic samples of colorectal cancer.

Fabio Cumbo, Simone Truglia, Emanuel Weitschek

Pageof 4

Frequent Collaborators

7 joint publications

Fabio Cumbo

4 joint publications

Björn Grüning

3 joint publications

Bérénice Batut

3 joint publications

Peter van Heusden

2 joint publications

Paul L Fox

2 joint publications

Matthias Bernt

2 joint publications

Nicola Soranzo

2 joint publications

Marie Macnee

2 joint publications

John Chilton

2 joint publications

Wolfgang Maier

Frequent Collaborators

7 joint publications

Fabio Cumbo

4 joint publications

Björn Grüning

3 joint publications

Bérénice Batut

3 joint publications

Peter van Heusden