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David Ryan Koes

26PUBLICATIONS

92CO-AUTHORS

Process control and simulationMolecular medicineBiomolecular modelling and designProteins and peptidesSequence analysis

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Publications (26)

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|Apr 27, 2026

FlowMol3: flow matching for 3D <i>de novo</i> small-molecule generation.

|Jan 08, 2026

A Cationic Amphiphilic Drug (CAD) Defense System in the Nematode <i>Caenorhabditis elegans</i>.

Levon Tokmakjian, Duhyun Han, Kateryna Sihuta

|Oct 17, 2025

GEOM-drugs revisited: toward more chemically accurate benchmarks for 3D molecule generation.

Filipp Nikitin, Ian Dunn, David Ryan Koes

|Jul 28, 2025

Sliding Window Interaction Grammar (SWING): a generalized interaction language model for peptide and protein interactions.

Jane C Siwek, Alisa A Omelchenko, Prabal Chhibbar

|Jun 20, 2025

CACHE Challenge #2: Targeting the RNA Site of the SARS-CoV-2 Helicase Nsp13.

Oleksandra Herasymenko, Madhushika Silva, Abd Al-Aziz A Abu-Saleh

|Dec 10, 2024

CACHE Challenge #1: Docking with GNINA Is All You Need.

Ian Dunn, Somayeh Pirhadi, Yao Wang

Pageof 5

Frequent Collaborators

4 joint publications

Jocelyn Sunseri

4 joint publications

Paul G Francoeur

3 joint publications

Geoffrey R Hutchison

2 joint publications

Jan Halborg Jensen

2 joint publications

Anders Hogner

2 joint publications

Dmitri Kireev

2 joint publications

Emanuele Carosati

2 joint publications

Rachel J Harding

2 joint publications

Aled Edwards

2 joint publications

Elisa Gibson

Frequent Collaborators

4 joint publications

Jocelyn Sunseri

4 joint publications

Paul G Francoeur

3 joint publications

Geoffrey R Hutchison

2 joint publications

Jan Halborg Jensen

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