David Ryan Koes

26PUBLICATIONS
92CO-AUTHORS
Process control and simulationMolecular medicineBiomolecular modelling and designProteins and peptidesSequence analysis
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Publications (26)

|Apr 27, 2026
FlowMol3: flow matching for 3D de novo small-molecule generation.

|Jan 08, 2026
A Cationic Amphiphilic Drug (CAD) Defense System in the Nematode Caenorhabditis elegans.

Levon Tokmakjian, Duhyun Han, Kateryna Sihuta

|Oct 17, 2025
GEOM-drugs revisited: toward more chemically accurate benchmarks for 3D molecule generation.

Filipp Nikitin, Ian Dunn, David Ryan Koes

|Jul 28, 2025
Sliding Window Interaction Grammar (SWING): a generalized interaction language model for peptide and protein interactions.

Jane C Siwek, Alisa A Omelchenko, Prabal Chhibbar

|Jun 20, 2025
CACHE Challenge #2: Targeting the RNA Site of the SARS-CoV-2 Helicase Nsp13.

Oleksandra Herasymenko, Madhushika Silva, Abd Al-Aziz A Abu-Saleh

|Dec 10, 2024
CACHE Challenge #1: Docking with GNINA Is All You Need.

Ian Dunn, Somayeh Pirhadi, Yao Wang

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Frequent Collaborators

4 joint publications

Jocelyn Sunseri

4 joint publications

Paul G Francoeur

3 joint publications

Geoffrey R Hutchison

2 joint publications

Jan Halborg Jensen