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Harmen J Bussemaker

15PUBLICATIONS

30CO-AUTHORS

Proteins and peptidesGenomics and transcriptomicsGene expression (incl. microarray and other genome-wide approaches)Molecular targetsGenome structure and regulation

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Publications (15)

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|Oct 15, 2025

Accurate affinity models for SH2 domains from peptide binding assays and free-energy regression.

Dejan Gagoski, H Tomas Rube, Chaitanya Rastogi

|Aug 28, 2025

Predicting the DNA binding specificity of transcription factor mutants using family-level biophysically interpretable machine learning.

Shaoxun Liu, Pilar Gomez-Alcala, Christ Leemans

|Jan 07, 2025

Accurate sequence-to-affinity models for SH2 domains from multi-round peptide binding assays coupled with free-energy regression.

Dejan Gagoski, H Tomas Rube, Chaitanya Rastogi

|Nov 01, 2024

Benchmarking and building DNA binding affinity models using allele-specific and allele-agnostic transcription factor binding data.

Xiaoting Li, Lucas A N Melo, Harmen J Bussemaker

|Feb 14, 2024

Predicting the DNA binding specificity of transcription factor mutants using family-level biophysically interpretable machine learning.

Shaoxun Liu, Pilar Gomez-Alcala, Christ Leemans

|Jan 03, 2024

Benchmarking DNA binding affinity models using allele-specific transcription factor binding data.

Xiaoting Li, Lucas A N Melo, Harmen J Bussemaker

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Frequent Collaborators

6 joint publications

Chaitanya Rastogi

6 joint publications

Lucas A N Melo

5 joint publications

Richard S Mann

4 joint publications

Xiaoting Li

3 joint publications

Bas van Steensel

3 joint publications

Neel H Shah

2 joint publications

H Tomas Rube

2 joint publications

Rashmi Voleti

2 joint publications

Dejan Gagoski

1 joint publications

Elzo de Wit

Frequent Collaborators

6 joint publications

Chaitanya Rastogi

6 joint publications

Lucas A N Melo

5 joint publications

Richard S Mann

4 joint publications

Xiaoting Li

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