Cole Trapnell

40PUBLICATIONS

180CO-AUTHORS

Genome structure and regulationEpigenetics (incl. genome methylation and epigenomics)Gene expression (incl. microarray and other genome-wide approaches)Molecular targetsLiquid biopsies

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Publications (40)

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|Jun 05, 2026

Embryo-scale Visual Cell Sorting reveals a conserved transcriptomic signature of nucleolar size linked to proteostasis.

|Apr 17, 2026

Evolutionary transfer learning enables organism-wide inference of mammalian enhancer landscapes.

|Nov 24, 2025

Single-cell, multi-region profiling of the macaque brain across the lifespan.

Wei Yang, Kelsi L Watkins, Alex R DeCasien

|May 13, 2025

The regulatory potential of transposable elements in maize.

Kerry L Bubb, Morgan O Hamm, Thomas W Tullius

|Apr 16, 2025

A statistical framework for inferring genetic requirements from embryo-scale single-cell sequencing experiments.

Madeleine Duran, Eliza Barkan, Amy Tresenrider

|Apr 16, 2025

Embryo-scale single-cell chemical transcriptomics reveals dependencies between cell types and signaling pathways.

Eliza Barkan, Madeleine Duran, Nicholas Lammers

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Frequent Collaborators

20 joint publications

Jay Shendure

Junyue Cao

Madeleine Duran

Riza M Daza

Jonathan S Packer

Lauren Saunders

Hannah A Pliner

Chengxiang Qiu

Jose L McFaline-Figueroa

4 joint publications

Andrew C Adey

Frequent Collaborators

20 joint publications

Jay Shendure

8 joint publications

Junyue Cao

7 joint publications

Madeleine Duran

7 joint publications

Riza M Daza