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Timothy R Hughes

26PUBLICATIONS
130CO-AUTHORS
Bioinformatic methods developmentMineral processing/beneficiationGenomics and transcriptomicsSequence analysisGenome structure and regulation
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Journal

Publications (26)

Sort by Publication Date:
|Dec 03, 2025
Inferring binding specificities of human transcription factors with the wisdom of crowds.

Nikita Gryzunov, Dmitry Penzar, Vasilii Kamenets

|Nov 24, 2025
Differential usage of two, distinct DNA-binding domains regulates tissue-specific occupancy of the pioneer factor Zelda.

Eliana F Torres-Zelada, Hideyuki Komori, Hsiao-Yun Liu

|Nov 07, 2025
Cross-platform motif discovery and benchmarking to explore binding specificities of poorly studied human transcription factors.

Ilya E Vorontsov, Ivan Kozin, Sergey Abramov

|Oct 29, 2025
CisBP-RNA: a web resource for eukaryotic RNA-binding proteins and their motifs.

Diego A Rosado-Tristani, Mihai Albu, Xiaoting Chen

|Aug 06, 2025
Systematic investigation reveals extensive Epstein-Barr virus transcriptional regulation of the human genome.

Phillip J Dexheimer, Matthew R Hass, Lee E Edsall

|Jul 27, 2025
A resource of RNA-binding protein motifs across eukaryotes reveals evolutionary dynamics and gene-regulatory function.

Alexander Sasse, Debashish Ray, Kaitlin U Laverty

Pageof 5

Frequent Collaborators

7 joint publications

Matthew T Weirauch

5 joint publications

Ivan V Kulakovskiy

5 joint publications

Kaitlin U Laverty

5 joint publications

Bart Deplancke

5 joint publications

Quaid Morris

4 joint publications

Ally W H Yang

4 joint publications

Ivan Kozin

4 joint publications

Judith F Kribelbauer-Swietek

4 joint publications

Arttu Jolma

4 joint publications

Antoni J Gralak

Frequent Collaborators

7 joint publications

Matthew T Weirauch

5 joint publications

Ivan V Kulakovskiy

5 joint publications

Kaitlin U Laverty

5 joint publications

Bart Deplancke

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