J Gregory Caporaso

32PUBLICATIONS
130CO-AUTHORS
Microbial ecologyMicrobial geneticsProteomics and metabolomicsAutomated software engineeringMedical virology
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Publications (32)

|Jul 10, 2026
Exploring life's hidden majority: microbial dark matter symposium highlights.

|Apr 27, 2026
Identify contaminants with decontam on the QIIME 2 Framework.

|Dec 11, 2025
Scikit-bio: a fundamental Python library for biological omic data analysis.

Matthew Aton, Daniel McDonald, Jorge Cañardo Alastuey

|Oct 06, 2025
Facilitating bootstrapped and rarefaction-based microbiome diversity analysis with q2-boots.

Isaiah Raspet, Elizabeth Gehret, Chloe Herman

|Jul 31, 2025
Assessing microbiome engraftment extent following fecal microbiota transplant with q2-fmt.

Chloe Herman, Evan Bolyen, Anthony Simard

|Feb 20, 2025
MOSHPIT: accessible, reproducible metagenome data science on the QIIME 2 framework.

Michal Ziemski, Liz Gehret, Anthony Simard

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Frequent Collaborators

8 joint publications

Nicholas A Bokulich

7 joint publications

Rob Knight

5 joint publications

Emily Vogtmann

4 joint publications

Christopher R Keefe