James R Brown

13PUBLICATIONS

31CO-AUTHORS

Biomolecular modelling and designPhylogeny and comparative analysisCheminformatics and quantitative structure-activity relationshipsMedical mycologyMedical parasitology

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Publications (13)

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|Jun 25, 2026

Nevermore: Target-Conditioned Protein-Ligand Representation Learning for Multi-Objective Lead Optimization with Database-Grounded Retrieval.

|Mar 29, 2025

Enhancing nucleotide sequence representations in genomic analysis with contrastive optimization.

Mohammadsaleh Refahi, Bahrad A Sokhansanj, Joshua C Mell

|Mar 06, 2021

Expanding the drug discovery space with predicted metabolite-target interactions.

Andrea Nuzzo, Somdutta Saha, Ellen Berg

|Jul 29, 2020

Multi-omic meta-analysis identifies functional signatures of airway microbiome in chronic obstructive pulmonary disease.

Zhang Wang, Yuqiong Yang, Zhengzheng Yan

|Jun 03, 2020

PICRUSt2 for prediction of metagenome functions.

Gavin M Douglas, Vincent J Maffei, Jesse R Zaneveld

|Dec 15, 2019

Obesity and disease severity magnify disturbed microbiome-immune interactions in asthma patients.

David Michalovich, Noelia Rodriguez-Perez, Sylwia Smolinska

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Frequent Collaborators

Stephanie Van Horn

Gail L Rosen

Hyunwoo Yoo

Bahrad A Sokhansanj

Mohammadsaleh Refahi

Michael L Washburn

Julie Grossman

Victoria N Yi

William G Hawkins

Karl J Staples

Frequent Collaborators

Stephanie Van Horn

Gail L Rosen

Hyunwoo Yoo

Bahrad A Sokhansanj