Matthew Ruffalo

8PUBLICATIONS
38CO-AUTHORS
Computational neuroscience (incl. mathematical neuroscience and theoretical neuroscience)Data models, storage and indexingInformation systems development methodologies and practiceBiological network analysisPredictive and prognostic markers
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Publications (8)

|Feb 23, 2026
SenNet Portal: Build, Optimization and Usage.

Katy Börner, Philip D Blood, Jonathan C Silverstein

|Feb 16, 2026
SPRM: spatial process and relationship modeling for multiplexed images.

Ted Zhang, Haoran Chen, Young Je Lee

|Mar 14, 2025
Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas construction and usage.

Katy Börner, Philip D Blood, Jonathan C Silverstein

|Jun 03, 2024
Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas Construction and Usage.

Katy Börner, Philip D Blood, Jonathan C Silverstein

|Feb 10, 2023
Using single cell atlas data to reconstruct regulatory networks.

Qi Song, Matthew Ruffalo, Ziv Bar-Joseph

|Feb 12, 2019
Network-guided prediction of aromatase inhibitor response in breast cancer.

Matthew Ruffalo, Roby Thomas, Jian Chen

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Frequent Collaborators

3 joint publications

Danial Qaurooni

3 joint publications

Yashvardhan Jain

3 joint publications

Katy Börner

3 joint publications

Jonathan C Silverstein