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Matthew Ruffalo

8PUBLICATIONS

38CO-AUTHORS

Computational neuroscience (incl. mathematical neuroscience and theoretical neuroscience)Data models, storage and indexingInformation systems development methodologies and practiceBiological network analysisPredictive and prognostic markers

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Publications (8)

Sort by Publication Date:

|Feb 23, 2026

SenNet Portal: Build, Optimization and Usage.

Katy Börner, Philip D Blood, Jonathan C Silverstein

|Feb 16, 2026

SPRM: spatial process and relationship modeling for multiplexed images.

Ted Zhang, Haoran Chen, Young Je Lee

|Mar 14, 2025

Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas construction and usage.

Katy Börner, Philip D Blood, Jonathan C Silverstein

|Jun 03, 2024

Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas Construction and Usage.

Katy Börner, Philip D Blood, Jonathan C Silverstein

|Feb 10, 2023

Using single cell atlas data to reconstruct regulatory networks.

Qi Song, Matthew Ruffalo, Ziv Bar-Joseph

|Feb 12, 2019

Network-guided prediction of aromatase inhibitor response in breast cancer.

Matthew Ruffalo, Roby Thomas, Jian Chen

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Frequent Collaborators

3 joint publications

Danial Qaurooni

3 joint publications

Yashvardhan Jain

3 joint publications

Katy Börner

3 joint publications

Jonathan C Silverstein

3 joint publications

Rahul Satija

3 joint publications

Bruce W Herr

3 joint publications

Andreas Bueckle

2 joint publications

Ziv Bar-Joseph

2 joint publications

Philip D Blood

2 joint publications

Gloria Pryhuber

Frequent Collaborators

3 joint publications

Danial Qaurooni

3 joint publications

Yashvardhan Jain

3 joint publications

Katy Börner

3 joint publications

Jonathan C Silverstein

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