Joseph Hughes

43PUBLICATIONS
203CO-AUTHORS
Speciation and extinctionLinguistic structures (incl. phonology, morphology and syntax)Animal reproduction and breedingBiological adaptationHost-parasite interactions
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Publications (43)

|Aug 18, 2026
Phylogenetic inference with not-so-rare mutations and tiny organisms.

|Feb 19, 2026
From single-sequences to evolutionary trajectories: protein language models capture the evolutionary potential of SARS-CoV-2.

Kieran D Lamb, Joseph Hughes, Spyros Lytras

|Dec 15, 2025
The potential of H5N1 viruses to adapt to bovine cells varies throughout evolution.

Matthew L Turnbull, Mohammad Khalid Zakaria, Nicole S Upfold

|Nov 27, 2025
Avian-origin influenza A viruses tolerate elevated pyrexic temperatures in mammals.

Matthew L Turnbull, Yingxue Wang, Simon Clare

|Oct 15, 2025
ViralBottleneck: an R package for estimating viral transmission bottlenecks from deep sequencing data using multiple methods.

Bowen Zheng, Paul C D Johnson, Joseph Hughes

|Sep 16, 2025
Viro3D: a comprehensive database of virus protein structure predictions.

Ulad Litvin, Spyros Lytras, Alexander Jack

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Frequent Collaborators

17 joint publications

David L Robertson

9 joint publications

Emma Thomson

9 joint publications

Spyros Lytras

8 joint publications

Ana da Silva Filipe