Jakob Nybo Nissen

6PUBLICATIONS
19CO-AUTHORS
Computational ecology and phylogeneticsMedical infection agents (incl. prions)Veterinary virologyGene expression (incl. microarray and other genome-wide approaches)Genomics and transcriptomics
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Publications (6)

|Apr 27, 2026
Improving metagenome binning by integrating intrinsic features and taxonomy.

|Feb 04, 2026
Accurate plasmid reconstruction from metagenomics data using assembly-alignment graphs and contrastive learning.

Pau Piera Líndez, Lasse Schnell Danielsen, Iva Kovačić

|Jul 14, 2025
Exploring genetic signatures of zoonotic influenza A virus at the swine-human interface with phylogenetic and ancestral sequence reconstruction.

Klara M Anker, Marta M Ciucani, Jakob N Nissen

|Apr 07, 2025
CoverM: read alignment statistics for metagenomics.

Samuel T N Aroney, Rhys J P Newell, Jakob N Nissen

|Sep 27, 2024
Taxometer: Improving taxonomic classification of metagenomics contigs.

Svetlana Kutuzova, Mads Nielsen, Pau Piera

|Oct 21, 2023
Adversarial and variational autoencoders improve metagenomic binning.

Pau Piera Líndez, Joachim Johansen, Svetlana Kutuzova

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Frequent Collaborators

4 joint publications

Pau Piera Líndez

4 joint publications

Simon Rasmussen

2 joint publications

Lasse Schnell Danielsen

1 joint publications

Samuel T N Aroney