Shane Neph

6PUBLICATIONS
70CO-AUTHORS
Cell and nuclear divisionGene expression (incl. microarray and other genome-wide approaches)Epigenetics (incl. genome methylation and epigenomics)Genome structure and regulation
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Publications (6)

|Apr 27, 2026
Long-read MitoScope reveals tissue-resolved somatic mitochondrial variation and landscape of nuclear-embedded mitochondrial sequences.

|Feb 27, 2026
Donor-specific assemblies enhance somatic structural variant detection in complex genomic regions.

Taralynn Mack, Jiadong Lin, Luyao Ren

|Jan 09, 2026
Haplotype-Resolved Genomics Reveals Conserved Chromatin Architecture and Epigenetic Constraints of Human Neocentromeres.

Savannah J Hoyt, Gabrielle A Hartley, Mariah C Antopia

|Sep 15, 2025
CUT&TIME captures the history of open chromatin in developing neurons.

Kiara C Eldred, Matthew Wooten, Derek H Janssens

|Jun 12, 2025
A haplotype-resolved view of human gene regulation.

Mitchell R Vollger, Elliott G Swanson, Shane J Neph

|Apr 01, 2025
Integrating Single-Molecule Sequencing and Deep Learning to Predict Haplotype-Specific 3D Chromatin Organization in a Mendelian Condition.

Danilo Dubocanin, Anna Kalygina, J Matthew Franklin

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Frequent Collaborators

6 joint publications

Andrew B Stergachis

4 joint publications

Katherine M Munson

4 joint publications

Evan E Eichler

4 joint publications

Kendra Hoekzema