Josh L Espinoza

13PUBLICATIONS

56CO-AUTHORS

Microbial taxonomyProteomics and metabolomicsWater treatment processesMicrobial geneticsPredictive and prognostic markers

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Publications (13)

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|Oct 05, 2026

Leviathan: fast, memory-efficient, and scalable taxonomic and pathway profiling for (pan)genome-resolved metagenomics and metatranscriptomics.

|Jun 05, 2026

Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscriptomics.

|Nov 28, 2024

Blood cultures contain populations of genetically diverse Candida albicans strains that may differ in echinocandin tolerance and virulence.

Giuseppe Fleres, Shaoji Cheng, Hassan Badrane

|Jul 17, 2024

Mixotrophic growth of a ubiquitous marine diatom.

Manish Kumar, Juan D Tibocha-Bonilla, Zoltán Füssy

|Jun 23, 2024

Unveiling the microbial realm with VEBA 2.0: a modular bioinformatics suite for end-to-end genome-resolved prokaryotic, (micro)eukaryotic and viral multi-omics from either short- or long-read sequencing.

Josh L Espinoza, Allan Phillips, Melanie B Prentice

|Apr 15, 2024

Host-microbiome associations in saliva predict COVID-19 severity.

Hend Alqedari, Khaled Altabtbaei, Josh L Espinoza

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Frequent Collaborators

Christopher L Dupont

Marcelo Freire

Naisha Shah

Aubrie O'Rourke

Sinem Beyhan

Kirsten J Meyer

Yongwook Choi

Kim Lewis

Erika P Santoro

Ricardo M Borges

Frequent Collaborators

Christopher L Dupont

Marcelo Freire

Naisha Shah

Aubrie O'Rourke