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Jakub Rydzewski

17PUBLICATIONS
74CO-AUTHORS
Epigenetics (incl. genome methylation and epigenomics)Epidemiological modellingNeural networksSemi- and unsupervised learningStochastic analysis and modelling
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Journal

Publications (17)

Sort by Publication Date:
|Jun 22, 2026
Decoding the Conformational Dynamics and Hyperactivity of Histone H3K36 N-Methyltransferase in Oncogenic Mutations via tICA and Markov State Modeling.

|Nov 17, 2025
Constructing Generalized Sample Transition Probabilities with Biased Simulations.

Yanbin Wang, Jakub Rydzewski, Ming Chen

|Jul 14, 2025
NeuralTSNE: A Python Package for the Dimensionality Reduction of Molecular Dynamics Data Using Neural Networks.

Patryk Tajs, Mateusz Skarupski, Jakub Rydzewski

|Mar 04, 2025
PLUMED Tutorials: A collaborative, community-driven learning ecosystem.

Gareth A Tribello, Massimiliano Bonomi, Giovanni Bussi

|Dec 19, 2024
Correction to "Spectral Map: Embedding Slow Kinetics in Collective Variables".

Jakub Rydzewski

|Sep 12, 2024
Spectral Map for Slow Collective Variables, Markovian Dynamics, and Transition State Ensembles.

Jakub Rydzewski

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Frequent Collaborators

3 joint publications

Omar Valsson

3 joint publications

Katarzyna Walczewska-Szewc

2 joint publications

Ming Chen

1 joint publications

Natalia Szostak

1 joint publications

Wieslaw Nowak

1 joint publications

Aneta Lewkowicz

1 joint publications

Krzysztof Kuczera

1 joint publications

Beata Niklas

1 joint publications

Bruno Lapied

1 joint publications

Tuğçe Gökdemir

Frequent Collaborators

3 joint publications

Omar Valsson

3 joint publications

Katarzyna Walczewska-Szewc

2 joint publications

Ming Chen

1 joint publications

Natalia Szostak