Jakub Rydzewski

18PUBLICATIONS
75CO-AUTHORS
Biomolecular modelling and designEpigenetics (incl. genome methylation and epigenomics)Epidemiological modellingNeural networksSemi- and unsupervised learning
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Publications (18)

|Jul 09, 2026
Unraveling the Mechanism of Drug Binding to SARS-CoV-2 RNA Pseudoknot With Thermodynamics-Driven Machine Learning.

|Jun 22, 2026
Decoding the Conformational Dynamics and Hyperactivity of Histone H3K36 N-Methyltransferase in Oncogenic Mutations via tICA and Markov State Modeling.

|Nov 17, 2025
Constructing Generalized Sample Transition Probabilities with Biased Simulations.

Yanbin Wang, Jakub Rydzewski, Ming Chen

|Jul 14, 2025
NeuralTSNE: A Python Package for the Dimensionality Reduction of Molecular Dynamics Data Using Neural Networks.

Patryk Tajs, Mateusz Skarupski, Jakub Rydzewski

|Mar 04, 2025
PLUMED Tutorials: A collaborative, community-driven learning ecosystem.

Gareth A Tribello, Massimiliano Bonomi, Giovanni Bussi

|Dec 19, 2024
Correction to "Spectral Map: Embedding Slow Kinetics in Collective Variables".

Jakub Rydzewski

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Frequent Collaborators

3 joint publications

Omar Valsson

3 joint publications

Katarzyna Walczewska-Szewc

2 joint publications

Ming Chen

1 joint publications

Natalia Szostak