Jakub Rydzewski

17PUBLICATIONS

74CO-AUTHORS

Epigenetics (incl. genome methylation and epigenomics)Epidemiological modellingNeural networksSemi- and unsupervised learningStochastic analysis and modelling

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Publications (17)

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|Jun 22, 2026

Decoding the Conformational Dynamics and Hyperactivity of Histone H3K36 N-Methyltransferase in Oncogenic Mutations via tICA and Markov State Modeling.

|Nov 17, 2025

Constructing Generalized Sample Transition Probabilities with Biased Simulations.

Yanbin Wang, Jakub Rydzewski, Ming Chen

|Jul 14, 2025

NeuralTSNE: A Python Package for the Dimensionality Reduction of Molecular Dynamics Data Using Neural Networks.

Patryk Tajs, Mateusz Skarupski, Jakub Rydzewski

|Mar 04, 2025

PLUMED Tutorials: A collaborative, community-driven learning ecosystem.

Gareth A Tribello, Massimiliano Bonomi, Giovanni Bussi

|Dec 19, 2024

Correction to "Spectral Map: Embedding Slow Kinetics in Collective Variables".

Jakub Rydzewski

|Sep 12, 2024

Spectral Map for Slow Collective Variables, Markovian Dynamics, and Transition State Ensembles.

Jakub Rydzewski

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Frequent Collaborators

3 joint publications

Omar Valsson

3 joint publications

Katarzyna Walczewska-Szewc

Ming Chen

Natalia Szostak

Wieslaw Nowak

Aneta Lewkowicz

Krzysztof Kuczera

Beata Niklas

Bruno Lapied

Tuğçe Gökdemir

Frequent Collaborators

3 joint publications

Omar Valsson

3 joint publications

Katarzyna Walczewska-Szewc

2 joint publications

Ming Chen

1 joint publications

Natalia Szostak