David Hoksza

14PUBLICATIONS
37CO-AUTHORS
Natural language processingBioinformatic methods developmentAutomated software engineeringSequence analysisNeurology and neuromuscular diseases
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Publications (14)

|Mar 26, 2026
Decoding Allosteric Grammar with Explainable AI Integrating Protein Language Models and Energy Landscape Analysis: Neutral Frustration at Allosteric Binding Sites Encodes Regulatory Versatility in Protein Kinases.

Will Gatlin, Max Ludwick, Lucas Turano

|Jan 16, 2026
Protein Language Models and Structure-Based Machine Learning for Prediction of Allosteric Binding Sites in Protein Kinases: An Explainable AI Framework Grounded in Energy Landscape-Encoded Frustration.

Kamila Riedlová, Vít Škrhák, Will Gatlin

|May 19, 2025
PrankWeb 4: a modular web server for protein-ligand binding site prediction and downstream analysis.

Lukáš Polák, Petr Škoda, Kamila Riedlová

|Feb 19, 2025
R2DT: a comprehensive platform for visualizing RNA secondary structure.

Holly McCann, Caeden D Meade, Loren Dean Williams

|Feb 08, 2025
R2DT: a comprehensive platform for visualizing RNA secondary structure.

Holly McCann, Caeden D Meade, Loren Dean Williams

|Jan 13, 2025
R2DT: A COMPREHENSIVE PLATFORM FOR VISUALISING RNA SECONDARY STRUCTURE.

Holly McCann, Caeden D Meade, Loren Dean Williams

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Frequent Collaborators

4 joint publications

Carlos Eduardo Ribas

4 joint publications

Fábio Madeira

4 joint publications

Loren Dean Williams

4 joint publications

Anton S Petrov