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Updated: Aug 11, 2026

Preparation of Quality Inositol Pyrophosphates
Published on: September 3, 2011
An inositolphosphate-binding immunophilin, IPBP12
1Department of Biochemistry and Molecular Biology, UMDNJ-New Jersey Medical School, Newark, NJ 07103-2714, USA. cunnineb@umdnj.edu
Insights
A novel 12-kD inositol phosphate-binding protein (IPBP12) was identified as an FK506-binding protein (FKBP) in human cell membranes. This protein binds inositol phosphates and associates with protein kinases and phosphatases, suggesting a role in multiprotein complex assembly.
Area of Science:
- Molecular Biology
- Cell Biology
- Biochemistry
Background:
- Immunophilins are proteins that bind to immunosuppressants and possess peptidylprolyl cis-trans isomerase activity.
- FK506-binding proteins (FKBPs) are a class of immunophilins, with FKBP12 being a well-characterized cytosolic member.
- Inositol phosphates (IPs) are crucial signaling molecules involved in various cellular processes.
Purpose of the Study:
- To identify and characterize novel inositol phosphate-binding proteins.
- To investigate the enzymatic activity and ligand-binding properties of a newly discovered membrane-associated protein.
- To elucidate the potential cellular functions and interactions of this protein.
Main Methods:
- Isolation and purification of proteins from human erythrocyte and K562 cell membranes.
- Assay of peptidylprolyl cis-trans isomerase activity and inhibition studies using FK506, rapamycin, and various inositol phosphates.
- Protein sequencing of tryptic peptides and immunoprecipitation assays to identify interacting proteins.
Main Results:
- A novel 12-kD inositol phosphate-binding protein (IPBP12) was identified, exhibiting FKBP-like activity.
- IPBP12's isomerase activity was inhibited by FK506 and rapamycin, but uniquely by inositol 1,4,5-trisphosphate (IP(3)) and inositol 1,3,4,5-tetrakisphosphate (IP(4)).
- IPBP12 was found to associate with a protein kinase and phosphoprotein phosphatase 2A (PP-2A), and sequencing suggested cytoskeletal localization.
Conclusions:
- A novel membrane-associated immunophilin, IPBP12, binds both inositol phosphates and FK506-like compounds.
- IPBP12's interaction with IPs and its association with kinase/phosphatase complexes suggest a role in regulating cellular signaling pathways.
- Immunophilins may function in assembling multiprotein complexes involved in signal transduction and cellular regulation.
Abstract:
A novel inositolphosphate-binding protein has been identified and shown to be an immunophilin. This protein, which was isolated from human erythrocyte membranes and from K562 (human erythroleukemia) cell membranes, has robust peptidylprolyl cis-trans isomerase activity that is strongly inhibited by nanomolar concentrations of FK506 or rapamycin, indicating a member of the FKBP (FK506-binding protein) class. However, unlike the cytosolic FKBP12, the isomerase activity of this membrane-associated immunophilin is strongly inhibited by nanomolar concentrations of inositol 1,4, 5-trisphosphate (IP(3)), inositol 1,3,4,5-tetrakisphosphate (IP(4)), and phosphatidylinositol 4- and 4,5-phosphates, which are suggested to be physiological ligands. The demonstration of a single 12-kD protein that binds both IP(4) or IP(3) and anti-FKBP12 provides strong support for the inositolphosphate-binding immunophilin having an apparent mass of 12 kD, and it is suggested that the protein might be called IPBP12 for 12-kD inositol phosphate binding protein. When an internal tryptic peptide derived from IPBP12 was sequenced, a sequence also present in human cytokeratin 10 was identified, suggesting a cytoskeletal localization for the immunophilin. While purifying IPBP12, it was found that it is immunoprecipitated with specific proteins that include a protein kinase and a phosphoprotein phosphatase. The latter is indicated to be phosphoprotein phosphatase 2A (PP-2A). It is suggested that immunophilins promote the assembly of multiprotein complexes that often include a protein kinase or a phosphoprotein phosphatase or both.
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