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Updated: Aug 14, 2026

A G-quadruplex DNA-affinity Approach for Purification of Enzymatically Active G4 Resolvase1
Published on: March 18, 2017
An intrahelical salt bridge within the trigger site stabilizes the GCN4 leucine zipper
R A Kammerer1, V A Jaravine, S Frank
1Departments of Biophysical Chemistry and Structural Biology, Biozentrum, University of Basel, Klingelbergstrasse 70, CH-4056 Basel, Switzerland.
Insights
A key salt bridge stabilizes the GCN4 leucine zipper
Area of Science:
- Protein structure and folding
- Biophysics
- Molecular biology
Background:
- The GCN4 leucine zipper forms a parallel two-stranded coiled coil.
- A helical trigger segment is essential for coiled coil formation.
Purpose of the Study:
- Investigate the role of an intrahelical salt bridge in stabilizing the GCN4 trigger segment.
- Determine the effect of disrupting this salt bridge on GCN4 dimer stability and folding.
Main Methods:
- Site-directed mutagenesis to remove the salt bridge.
- Nuclear magnetic resonance (NMR) spectroscopy to assess structural changes.
- Analysis of dimeric structure stability.
Main Results:
- A single amino acid mutation removing the salt bridge caused minor backbone changes in the dimer.
- The mutation significantly destabilized the overall dimeric structure.
- The helical trigger segment's secondary structure is stabilized by the salt bridge.
Conclusions:
- The intrahelical salt bridge is crucial for stabilizing the GCN4 trigger segment's helical structure.
- Disruption of the salt bridge destabilizes the GCN4 coiled coil dimer.
- Findings support a hierarchical folding model where trigger segment helix formation precedes dimerization.
Abstract:
We previously reported that a helical trigger segment within the GCN4 leucine zipper monomer is indispensable for the formation of its parallel two-stranded coiled coil. Here, we demonstrate that the intrinsic secondary structure of the trigger site is largely stabilized by an intrahelical salt bridge. Removal of this surface salt bridge by a single amino acid mutation induced only minor changes in the backbone structure of the GCN4 leucine zipper dimer as verified by nuclear magnetic resonance. The mutation, however, substantially destabilized the dimeric structure. These findings support the proposed hierarchic folding mechanism of the GCN4 coiled coil in which local helix formation within the trigger segment precedes dimerization.
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