Related Experiment Video
Updated: Aug 8, 2026

VDJ-Seq: Deep Sequencing Analysis of Rearranged Immunoglobulin Heavy Chain Gene to Reveal Clonal Evolution Patterns of B Cell Lymphoma
Published on: December 28, 2015
Characterization of a new subgroup of human Ig V lambda cDNA clone and its expression
Y Tsunetsugu-Yokota1, T Minekawa, K Shigemoto
1Department of Cellular Immunology, National Institute of Health, Tokyo, Japan.
Insights
Researchers identified a novel human immunoglobulin lambda light chain gene, YM-1, belonging to a new V lambda subgroup. This gene is expressed early in B cell maturation, even before V-JC gene joining.
Area of Science:
- Immunology
- Molecular Biology
- Genetics
Background:
- Immunoglobulin lambda light chains play a crucial role in B cell receptor function.
- Identification of novel V lambda gene segments contributes to understanding B cell repertoire diversity.
Purpose of the Study:
- To clone and characterize a novel human immunoglobulin lambda light chain gene.
- To determine the V lambda subgroup classification and expression pattern of the identified gene.
Main Methods:
- Screening of a human bone marrow cDNA library using a murine pre-B cell-specific cDNA probe.
- Sequence analysis of the cloned gene (YM-1) and comparison with known V lambda genes.
- Southern blot analysis to detect cross-hybridizing V lambda bands.
- Analysis of YM-1 gene expression in B cell lines.
Main Results:
- A novel gene, YM-1, encoding a 240-amino acid protein with immunoglobulin lambda light chain structure was identified.
- YM-1 shares high homology with the J lambda 2 C lambda 2 region and exhibits significant homology with a known V lambda gene (T1), but represents a new V lambda subgroup.
- Southern blot analysis revealed multiple cross-hybridizing V lambda bands.
- YM-1 gene expression was detected in both immature and mature B cell lines, irrespective of V-JC gene joining.
Conclusions:
- YM-1 represents a novel V lambda subgroup, distinct from previously characterized subgroups.
- The expression of YM-1 in early B cell maturation stages suggests its involvement in the initial development of the B cell repertoire.
- The findings expand the understanding of human immunoglobulin lambda light chain gene organization and expression during B cell development.
Abstract:
From a human bone marrow cDNA library, we have cloned and sequenced a gene which cross-hybridized with murine pre-B cell-specific gene 8HS-20 cDNA under the low-stringent condition. Sequence analysis predicted that this gene (YM-1) encoded 240 amino acids which had the basic structure of immunoglobulin lambda light chain. The 3' half of the YM-1 sequence was identical to the J lambda 2 C lambda 2 region except for four nucleotides. The 5' part of the gene had 87.6% sequence homology with the reported V lambda gene called T1. Comparison of the deduced amino acid sequences with representative members of the seven other V lambda subgroups showed considerable structural homology, but the maximum homology with these chains was 44%. Therefore, we conclude that YM-1 belongs to a new V lambda subgroup. Interestingly YM-1 showed higher homology with VpreB1 (56%) than with any of the other V lambda subgroups. By Southern blot analysis four to six cross-hybridizing V lambda bands were detected at high stringency. Expression of the V lambda gene was observed in immature as well as mature B cell lines without accompanying V-JC gene joining, suggesting that V lambda of the YM-1 locus is activated at the early stage of maturation.
More Related Videos
13:14Generation of Discriminative Human Monoclonal Antibodies from Rare Antigen-specific B Cells Circulating in Blood
Published on: February 6, 2018
09:02Immunoglobulin Gene Sequence Analysis In Chronic Lymphocytic Leukemia: From Patient Material To Sequence Interpretation
Published on: November 26, 2018