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Assessment of Immunologically Relevant Dynamic Tertiary Structural Features of the HIV-1 V3 Loop Crown R2 Sequence by ab initio Folding
Published on: September 16, 2010
Protein-protein interactions of HIV-1 reverse transcriptase: implication of central and C-terminal regions in subunit
S P Becerra1, A Kumar, M S Lewis
1Laboratory of Biochemistry, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892.
Insights
Individual human immunodeficiency virus 1 reverse transcriptase (RT) subunits, p66 and p51, can form a heterodimer. This binding involves hydrophobic interactions and requires specific regions of both p66 and p51.
Area of Science:
- Biochemistry
- Molecular Biology
- Virology
Background:
- Human immunodeficiency virus 1 reverse transcriptase (RT) is a heterodimer composed of p66 and p51 subunits.
- These subunits are identical except for a C-terminal truncation in p51.
- The precise mechanism of heterodimer formation and the roles of individual subunits are not fully understood.
Purpose of the Study:
- To investigate the in vitro protein-protein binding properties of individual bacterial-recombinant p66 and p51 subunits of HIV-1 RT.
- To determine the stoichiometry and binding affinity of p66 homodimers and p66/p51 heterodimers.
- To identify the regions of p66 and p51 critical for subunit association.
Main Methods:
- Preparation of individual bacterial-recombinant p66 and p51 polypeptides.
- Analytical ultracentrifugation to assess monomer-dimer equilibrium and binding affinities.
- Gel filtration analysis (FPLC Superose-12) to confirm dimerization.
- Immunoprecipitation assays to study subunit interactions and identify binding regions.
Main Results:
- p66 formed a monomer-dimer equilibrium with a binding affinity (KA) of 5.1 x 10(4) M-1.
- p51 did not dimerize under the tested conditions.
- Mixing p66 and p51 resulted in a 1:1 heterodimer with a higher binding affinity (KA) of 4.9 x 10(5) M-1.
- Binding between p66 and p51 was largely hydrophobic and resistant to high salt concentrations.
- Truncation of the C-terminal 15,000 Mr region of p66 abolished its binding to p66, while N-terminal truncation also eliminated binding.
Conclusions:
- Individual p66 and p51 subunits of HIV-1 RT can bind to form a 1:1 heterodimer.
- The central region of p66 and its C-terminal region are crucial for subunit binding.
- The inability of p51 to dimerize alone suggests its C-terminal truncation influences its binding properties.
Abstract:
Human immunodeficiency virus 1 reverse transcriptase (RT) purified from virions is composed of a approximately 51,000 Mr polypeptide and a approximately 66,000 Mr polypeptide that are thought to be in heterodimer structure (Chandra et al., 1986; Hansen et al., 1988; Starnes & Cheng, 1989) and are identical except for a 15,000 Mr C-terminal truncation in the smaller species (Di Marzo-Veronese et al., 1986). We prepared individual bacterial-recombinant RTs as the approximately 66,000 Mr polypeptide (p66) or as the approximately 51,000 Mr polypeptide (p51) and then conducted various in vitro protein-protein binding experiments. Analytical ultracentrifugation studies in 0.25 M NaCl at pH 6.5 revealed that p66 was in monomer-dimer equilibrium with KA of 5.1 x 10(4) M-1. p51 failed to dimerize and behaved as a monomer under these conditions. Mixing of the p66 and p51 polypeptides resulted in a 1:1 heterodimer with KA of 4.9 x 10(5) M-1. These results on formation of the p66/p66 homodimer and p66/p51 heterodimer were confirmed by gel filtration analysis using FPLC Superose-12 columns. Binding between p66 and individual p66 segment polypeptides also was observed using an immunoprecipitation assay. Binding between p51 and p66 in this assay was resistant to the presence of approximately 1 M NaCl, suggesting that the binding free energy has a large hydrophobic component. C-Terminal truncation of p66 to yield a 29-kDa polypeptide eliminated binding to p66, and N-terminal truncation of p66 to yield a 15-kDa peptide also eliminated binding to p66. The results indicate that purified individual RT peptides p51 and p66 are capable of binding to form a 1:1 heterodimer and suggest that the central region of p66 is required for this subunit binding; the C-terminal region (15,000 Mr) of p66 appears to be required also, as p51 alone did not dimerize.
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