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Enrichment of Extracellular Matrix Proteins from Tissues and Digestion into Peptides for Mass Spectrometry Analysis
Published on: July 23, 2015
Protein extraction from mammalian tissues
1Department of Biomedical Sciences, Florida State University College of Medicine, Tallahassee, USA.
Insights
This study presents a mild protocol for extracting clock proteins from mammalian tissues like liver, kidney, and brain. The method uses freezing, thawing, and homogenization, efficiently recovering over 90% of target proteins for Western blotting and co-immunoprecipitation.
Area of Science:
- Biochemistry
- Molecular Biology
- Mammalian Tissue Analysis
Background:
- Protein extraction is crucial for techniques like Western blotting and co-immunoprecipitation (coIP).
- Existing methods may not always be suitable for preserving delicate protein structures required for coIP.
- Clock proteins play vital roles in cellular and physiological processes.
Purpose of the Study:
- To describe a mild and efficient protocol for extracting clock proteins from diverse mammalian tissues.
- To ensure the extracted proteins are suitable for downstream applications such as Western blotting and coIP.
Main Methods:
- Tissue homogenization using a handheld homogenizer.
- A simple protocol involving freezing and thawing cycles.
- Extraction applied to mammalian tissues including liver, kidney, and brain.
Main Results:
- The protocol successfully extracts clock proteins from various mammalian tissues.
- Over 90% of clock proteins are recovered using this method.
- The extraction method is mild enough for subsequent coIP and Western blotting.
Conclusions:
- A robust and efficient protocol for clock protein extraction from mammalian tissues has been established.
- This method facilitates the study of clock proteins using Western blotting and coIP.
- The protocol's mildness preserves protein integrity for sensitive analyses.
Abstract:
For Western blotting and coimmunoprecipitation (coIP), protein samples must be extracted from tissues. The protocol described in this chapter has been used to extract clock proteins from mammalian tissues as diverse as liver, kidney, and brain. The extraction protocol is mild enough to be used for coIP as well as Western blotting. Simply, clock proteins are extracted from tissues by freezing and thawing, and homogenizing with a handheld homogenizer. This procedure extracts most (>90%) of the clock proteins from mammalian tissues.
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