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Updated: Jun 2, 2026

High-Resolution Three-Dimensional Whole-Organ Tomography of Microbial Infections
Published on: March 1, 2024
Whole-body imaging of infection using fluorescence
Ying Kong1, Ali R Akin, Kevin P Francis
1Department of Microbial and Molecular Pathogenesis, Texas A&M Health Sciences Center, College Station, Texas, USA.
Insights
Optical imaging with fluorescent reporters offers a versatile method for studying biological processes, including infectious diseases. This approach enables detailed examination of bacterial infections and other biological events.
Area of Science:
- Biomedical imaging
- Microbiology
- Cell biology
Background:
- Optical imaging is a rapidly advancing technique for investigating diverse biological processes.
- Fluorescent reporters are crucial tools for visualizing biological components and events in real-time.
- Understanding infectious processes requires advanced imaging modalities.
Purpose of the Study:
- To detail the application of fluorescence imaging for studying biological processes.
- To provide methods for using fluorescent reporters in examining infectious diseases.
- To demonstrate the broad applicability of fluorescence imaging techniques across various experimental systems.
Main Methods:
- Utilizing fluorescent reporters to visualize biological organisms, components, or events.
- Applying fluorescence imaging to study subcutaneous and pulmonary bacterial infections.
- Describing two distinct strategies: reporter enzyme fluorescence (REF) and fluorescent proteins.
Main Results:
- Demonstrated the utility of fluorescence imaging for examining bacterial infections, specifically mycobacterial infections.
- Showcased the adaptability of these methods for various bacterial species including Pseudomonas, Legionella, Salmonella, Escherichia, Borrelia, and Staphylococcus.
- Highlighted the general applicability of fluorescence imaging to diverse infectious routes and agents.
Conclusions:
- Fluorescence imaging with fluorescent reporters is a powerful and broadly applicable tool for biological research.
- The described methods facilitate the study of infectious processes and other biological phenomena.
- This technique offers a versatile platform for advancing our understanding in microbiology, immunology, and cell biology.
Abstract:
Optical imaging is emerging as a powerful tool to study physiological, neurological, oncological, cell biological, molecular, developmental, immunological, and infectious processes. This unit describes the use of fluorescent reporters for biological organisms, components, or events. We describe the application of fluorescence imaging to examination of infectious processes, in particular subcutaneous and pulmonary bacterial infections, but the same approaches are applicable to nearly any infectious route. The strategies described use mycobacterial infections as an example, but nearly identical systems can be used for Pseudomonas, Legionella, Salmonella, Escherichia, Borrelia, and Staphylococus, suggesting that the approaches are generally applicable to nearly any infectious agent. Two strategies for fluorescence imaging are described: the first method uses reporter enzyme fluorescence (REF), and the second uses fluorescent proteins for fluorescence imaging. Methods are described in detail to facilitate successful application of these emerging technologies to nearly any experimental system.
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