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Updated: Mar 13, 2026

Induction and Assessment of Class Switch Recombination in Purified Murine B Cells
Published on: August 13, 2010
MBD4 Facilitates Immunoglobulin Class Switch Recombination
Fernando Grigera1, Robert Wuerffel1, Amy L Kenter2
1Department of Microbiology and Immunology, University of Illinois College of Medicine, Chicago, Illinois, USA.
Insights
Methyl-CpG binding domain protein 4 (MBD4) is crucial for immunoglobulin class switch recombination (CSR). MBD4 deficiency impairs DNA double-strand break formation and processing, highlighting its role in the mismatch repair pathway.
Area of Science:
- Immunology
- Molecular Biology
- Genetics
Background:
- Immunoglobulin heavy chain class switch recombination (CSR) involves DNA double-strand breaks (DSBs) and repair.
- Activation-induced cytidine deaminase (AID) initiates DSBs, requiring base excision repair (BER) and mismatch repair (MMR).
- Methyl-CpG binding domain protein 4 (MBD4) interacts with MLH1, suggesting a role in MMR.
Purpose of the Study:
- To investigate the role of MBD4 in CSR.
- To determine MBD4's function in DNA double-strand break formation and processing during CSR.
Main Methods:
- Deletion of MBD4 exons 6-8 in a B cell line.
- Assessment of DSB formation and CSR frequency.
- Analysis of DNA end processing and junctional sequences.
Main Results:
- MBD4 deletion significantly reduced DSB formation and CSR frequency.
- MBD4 deficiency resulted in DNA end processing deficits, similar to Msh2 and Mlh1 deficiencies.
- Microhomology-rich S-S junctions were enriched in MBD4-deleted cells.
Conclusions:
- MBD4 is essential for efficient DSB formation during CSR.
- MBD4 functions as a component of MMR-directed DNA end processing.
- MBD4 plays a critical role in maintaining genomic integrity during CSR.
Abstract:
Immunoglobulin heavy chain class switch recombination (CSR) requires targeted formation of DNA double-strand breaks (DSBs) in repetitive switch region elements followed by ligation between distal breaks. The introduction of DSBs is initiated by activation-induced cytidine deaminase (AID) and requires base excision repair (BER) and mismatch repair (MMR). The BER enzyme methyl-CpG binding domain protein 4 (MBD4) has been linked to the MMR pathway through its interaction with MutL homologue 1 (MLH1). We find that when Mbd4 exons 6 to 8 are deleted in a switching B cell line, DSB formation is severely reduced and CSR frequency is impaired. Impaired CSR can be rescued by ectopic expression of Mbd4 Mbd4 deficiency yields a deficit in DNA end processing similar to that found in MutS homologue 2 (Msh2)- and Mlh1-deficient B cells. We demonstrate that microhomology-rich S-S junctions are enriched in cells in which Mbd4 is deleted. Our studies suggest that Mbd4 is a component of MMR-directed DNA end processing.
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