Related Experiment Video
Updated: Feb 10, 2026

Flow Cytometric Analysis of Extracellular Vesicles from Cell-conditioned Media
Published on: February 12, 2019
Evaluation of the effect of storage condition on cell extraction and flow cytometric analysis from intestinal
Manon E Wildenberg1, Marjolijn Duijvestein1, Liset Westera2
1Tytgat Institute for Liver and Intestinal Research, Amsterdam, The Netherlands; Academic Medical Center, Department of Gastroenterology and Hepatology, Amsterdam, The Netherlands.
Insights
Storing intestinal biopsies at -20°C in DMSO/citrate buffer for up to 48 hours preserves viable immune cells for flow cytometry analysis. This method supports centralized analysis in clinical trials.
Area of Science:
- Immunology
- Gastroenterology
- Biotechnology
Background:
- Flow cytometry (FC) analysis of intestinal biopsies requires rapid processing for accurate immune cell phenotyping.
- Cell viability and data integrity are compromised by delays in sample processing.
Purpose of the Study:
- To evaluate the impact of various storage conditions on viable cell yield and immune cell proportions in intestinal biopsies.
- To determine optimal storage protocols for maintaining sample quality for FC analysis.
Main Methods:
- Intestinal biopsies (N=224) from Crohn's disease patients were stored under different conditions or processed immediately.
- Cells were isolated, stained for immune markers, and analyzed by FC.
Main Results:
- Storage at -80°C significantly decreased viable CD45+ cell counts.
- Storage at -20°C in DMSO/citrate buffer yielded adequate cells for FC analysis.
- CD3+ cell proportions decreased after 48h storage at 4°C in complete medium.
Conclusions:
- Storage of intestinal biopsies at -20°C in DMSO/citrate buffer for up to 48 hours is suitable for FC analysis.
- This storage method supports centralized FC analysis in multicenter clinical trials by enabling sample shipping and storage.
Background:
Flow cytometric (FC) analysis of intestinal tissue biopsies requires prompt cell isolation and processing to prevent cell death and generate valid data. We examined the effect of storage conditions prior to cell isolation and FC on viable cell yield and the proportions of immune cell phenotypes from intestinal biopsies.
Methods:
Biopsies (N = 224) from inflamed or non-inflamed ileal and/or colonic tissue from three patients with Crohn's disease were processed and analyzed immediately in duplicate, or stored under different conditions. Cells were isolated and stained for specific markers, followed by FC.
Results:
Decreased mean live CD45+ cell counts were observed after storage of biopsies at -80 °C dimethyl sulfoxide (DMSO)/citrate buffer compared with immediate processing (1794.3 vs. 19,672.7; p = 0.006]). A non-significant decrease in CD45+ live cell count occurred after storage at -20 °C in DMSO/citrate buffer and cell yield was adequate for subsequent analysis. CD3+ cell proportions were significantly lower after storage at 4 °C in complete medium for 48 h compared with immediate analysis. Mean CD14+ cell proportions were significantly higher after storage of biopsies at -80 °C in DMSO/citrate buffer compared with immediate analysis (2.61% vs. 1.31%, p = 0.007). CD4+, CD8+ and CD4+/CD8+ cell proportions were unaffected by storage condition.
Conclusion:
Storage of intestinal tissue biopsies at -20 °C in DMSO/citrate buffer for up to 48 h resulted in sufficient viable cell yield for FC analysis without affecting subsequent marker-positive cell proportions. These findings support the potential shipping and storage of intestinal biopsies for centralized FC analysis in multicenter clinical trials.
Related Concept Videos
Storage
Anatomy of the Intestines
Small Intestines
The small intestine is an ~7 meter-long tube with an inner diameter of just 2.5 cm. Since most nutrients are absorbed here, the inner lining of the...
Renewal of Intestinal Stem Cells
ATP Energy Storage and Release
One example of energy coupling using ATP involves a...
Sugars as Energy Storage Molecules
Fats as Energy Storage Molecules

