Related Experiment Video
Updated: Jan 24, 2026

Sequential Immunofluorescence and Immunohistochemistry on Cryosectioned Zebrafish Embryos
Published on: May 14, 2019
Sequential Immunofluorescence and Immunohistochemistry on Cryosectioned Zebrafish Embryos
Jordan L Ferguson, Heather R Shive1
1hrshive@ncsu.edu.
Insights
This study presents a new method for precisely mapping protein expression in zebrafish embryos. Sequential immunofluorescence and immunohistochemistry on cryosections enable accurate identification of multiple protein targets at the single-cell level.
Area of Science:
- Developmental biology
- Cell biology
- Molecular biology
Background:
- Investigating intercellular interactions requires precise cell labeling and protein localization.
- Zebrafish embryos offer an in vivo model for studying these interactions.
- Current whole-mount assays in zebrafish embryos have limitations in 3D co-localization and antibody compatibility.
Purpose of the Study:
- To describe a novel method for sequential immunofluorescence and/or immunohistochemistry on individual cryosections of early-stage zebrafish embryos.
- To enable precise identification of protein expression at the single-cell level.
- To overcome limitations of current techniques for mapping co-localized proteins and incompatible antibodies.
Main Methods:
- Sequential rounds of immunofluorescence and immunohistochemistry were performed on single cryosections of early-stage zebrafish embryos.
- Imaging was conducted after each immunolabeling step.
- This allowed for precise protein identification within individual cells.
Main Results:
- The described methodology allows for accurate mapping of co-localized proteins in three-dimensional space.
- It successfully addresses the challenge of using antibodies incompatible with the same technique.
- Precise identification of multiple protein targets at the single-cell level was achieved.
Conclusions:
- This sequential immunolabeling technique is suitable for early-stage zebrafish embryo studies.
- It enhances the ability to accurately identify multiple protein targets in individual cells.
- The method provides a powerful tool for investigating intercellular interactions and protein expression patterns.
Abstract:
Investigation of intercellular interactions often requires discrete labeling of specific cell populations and precise protein localization. The zebrafish embryo is an excellent tool for examining such interactions with an in vivo model. Whole-mount immunohistochemical and immunofluorescence assays are frequently applied in zebrafish embryos to assess protein expression. However, it can be difficult to achieve accurate mapping of co-localized proteins in three-dimensional space. In addition, some studies may require the use of two antibodies that are not compatible with the same technique (e.g., antibody 1 is only suitable for immunohistochemistry and antibody 2 is only suitable for immunofluorescence). The purpose of the method described herein is to perform sequential immunofluorescence and/or immunohistochemistry on individual cryosections derived from early-stage zebrafish embryos. Here we describe the use of sequential rounds of immunofluorescence, imaging, immunohistochemistry, imaging for a single cryosection in order to achieve precise identification of protein expression at the single-cell level. This methodology is suitable for any study in early-stage zebrafish embryos that requires accurate identification of multiple protein targets in individual cells.
Related Concept Videos
Immunocytochemistry and Immunohistochemistry
These...
Immunofluorescence Microscopy
Development of the Sexual Organs in the Embryo and Fetus
Near the gonadal ridges, two duct systems are present: the mesonephric ducts (Wolffian ducts) and paramesonephric ducts (Müllerian ducts). These ducts form the basis for the...
Seed Structure and Early Development of the Sporophyte
The Angiosperm Life Cycle
Cleavage and Blastulation

