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Updated: Oct 13, 2025

Indirect Immunofluorescence on Frozen Sections of Mouse Mammary Gland
Published on: December 1, 2015
Indirect Immunofluorescence of Tissue Sections
Cody J Aros1,2,3
1UCLA Department of Molecular Biology Interdepartmental Program, UCLA, Los Angeles, CA, USA. CAros@mednet.ucla.edu.
Insights
This study details immunofluorescence (IF) techniques for detecting protein localization in single cells using tissue sections. It provides a protocol for fixation, embedding, sectioning, and indirect IF assays, including troubleshooting tips.
Area of Science:
- Cell Biology
- Biochemistry
- Histology
Background:
- Immunofluorescence (IF) is crucial for visualizing protein localization within cells.
- Understanding subcellular protein distribution is key in biological research.
- Single-cell analysis provides granular insights into cellular functions.
Purpose of the Study:
- To describe a comprehensive protocol for indirect immunofluorescence assays on tissue sections.
- To enable the detection of protein species and their subcellular localization.
- To provide guidance for troubleshooting and optimizing IF procedures.
Main Methods:
- Tissue fixation and embedding techniques.
- Cryosectioning or microtome sectioning of embedded tissues.
- Indirect immunofluorescence staining protocol.
- Microscopic imaging and analysis.
Main Results:
- Successful application of indirect IF for protein localization at the subcellular level.
- Demonstration of single-cell resolution in protein detection.
- Identification of critical steps for protocol optimization.
Conclusions:
- The described IF protocol is effective for determining protein subcellular localization in tissue sections.
- This method allows for high-resolution analysis of protein distribution in individual cells.
- Optimization strategies enhance the reliability and accuracy of IF assays.
Abstract:
Immunofluorescence (IF) on tissue sections allows for the detection of protein species subcellular localization. IF studies further offer the ability to achieve this understanding at the level of single cell granularity. Here, we describe the processes by which tissue is fixed, embedded, sectioned, and subsequently utilized for conducting indirect IF assays. We raise potential opportunities for troubleshooting and optimization at varying stages of the protocol.
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