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A novel high-prevalence antigen in the Lutheran system, LUGA (LU24), and an updated, full-length 3D BCAM model
Aline Floch1,2,3, Christine Lomas-Francis3, Sunitha Vege3
1Univ Paris Est Creteil, INSERM U955 Equipe Transfusion et maladies du globule rouge, IMRB, Creteil, France.
Insights
Researchers identified a novel Lutheran antigen (LUGA) on basal cell adhesion molecule (BCAM) and developed an updated 3D model. This model aids in understanding antigen expression and evaluating new genetic variations.
Area of Science:
- Immunogenetics
- Molecular Biology
- Structural Biology
Background:
- Basal cell adhesion molecule (BCAM) encodes antigens for the Lutheran (LU) blood group system.
- BCAM plays a crucial role in red blood cell antigen expression and immune responses.
Purpose of the Study:
- To report a novel Lutheran antigen and its association with BCAM.
- To develop an updated, full-length 3D structural model of BCAM.
- To analyze the impact of genetic variations on Lutheran antigen expression.
Main Methods:
- Standard red blood cell testing and antibody identification.
- Genomic DNA sequencing of BCAM.
- Multi-template homology modeling for BCAM structure prediction.
- Analysis of residue accessibility for variant proteins.
Main Results:
- A novel Lutheran antigen, LUGA (LU24), was identified.
- Sequencing revealed three homozygous changes in BCAM, including c.212G>A (p.Arg71His), leading to LUGA antigen loss.
- An updated 3D model of BCAM was constructed, showing most antigen-associated residues are exposed.
Conclusions:
- The identified BCAM variant c.212G>A causes the loss of the LUGA (LU24) antigen.
- The new BCAM model and exposed residue data will aid in assessing the immunogenicity of novel polymorphisms.
Background:
The basal cell adhesion molecule (BCAM) carries the antigens of the Lutheran (LU, ISBT005) system. We report a novel Lutheran antigen and propose an updated, full-length 3D model of BCAM.
Study Design And Methods:
Red blood cell testing, antibody identification, and BCAM genomic DNA sequencing were done by standard methods. Multi-template homology modeling of BCAM used structural templates selected for coverage, highest sequence identity, and protein domain family. All variants causing the loss or gain of a Lutheran antigen were analyzed for residue accessibility and intraprotein interactions.
Results:
An antibody to a high-prevalence antigen in the plasma of a pregnant woman was determined to be directed at a novel Lutheran antigen. Sequencing of BCAM found three homozygous changes: c.212G > A (p.Arg71His) and two silent, c.711C > T and c.714C > T. The model was built from the first two immunoglobulin crystallized domains of BCAM (D1, D2), three other templates (for D3, D4 and D5 with a higher sequence identity with the target than those used for the model proposed by Burton and Brady in 2008, and for the transmembrane region) and RaptorX (for the intracellular domain). All residues associated with a Lutheran antigen were found to be exposed in wild-type or variant proteins, except p.447 associated with loss of Lu13 expression.
Conclusion:
The c.212G > A change results in the loss of LUGA (LU24) antigen. Whole genome sequencing continues to reveal polymorphisms with uncertain immunogenicity. This model and demonstration that nearly all residues associated with the expression of a Lutheran antigen are exposed will help evaluate the significance of new polymorphisms.
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