Identification and immuno-infiltration analysis of cuproptosis regulators in human spermatogenic dysfunction

Ming Zhao1,2, Wen-Xiao Yu2, Sheng-Jing Liu2

  • 1Graduate School, Beijing University of Chinese Medicine, Beijing, China.

Frontiers in Genetics
|April 17, 2023
PubMed

Insights

Cuproptosis, a cell death process, is linked to human spermatogenic dysfunction (SD). Researchers identified key cuproptosis-related genes and developed a 5-gene predictive model for SD, showing promising accuracy in validation.

Area of Science:

  • Biochemistry and Molecular Biology
  • Reproductive Medicine
  • Immunology

Background:

  • Cuproptosis (copper-induced cell death) is implicated in various disease pathologies.
  • Spermatogenic dysfunction (SD) significantly impacts male fertility.
  • Understanding the molecular mechanisms linking cuproptosis and SD is crucial for potential therapeutic targets.

Purpose of the Study:

  • To investigate the role of cuproptosis-related genes in human spermatogenic dysfunction.
  • To analyze immune cell infiltration patterns in SD.
  • To construct and validate a predictive model for SD based on cuproptosis regulators.

Main Methods:

  • Utilized Gene Expression Omnibus (GEO) datasets (GSE4797, GSE45885) for male infertility patients.
  • Identified differentially expressed cuproptosis-related genes (deCRGs) and analyzed immune cell infiltration.
  • Employed Weighted Gene Co-expression Network Analysis (WGCNA) and Gene Set Variation Analysis (GSVA).
  • Developed and validated a machine learning model (eXtreme Gradient Boosting - XGB) using nomograms, calibration curves, and decision curve analysis (DCA).

Main Results:

  • Identified 11 deCRGs in SD, with specific genes like ATP7A and PDHA1 upregulated.
  • Discovered two distinct molecular clusters in SD exhibiting immune infiltration heterogeneity.
  • Cluster 2 showed elevated expression of certain cuproptosis genes and increased resting memory CD4+ T cells.
  • A 5-gene XGB model achieved an AUC of 0.812 on an external validation dataset, demonstrating high predictive accuracy for SD.

Conclusions:

  • Cuproptosis plays a preliminary role in the pathogenesis of spermatogenic dysfunction.
  • A novel, accurate predictive model for SD has been developed using cuproptosis-related genes.
  • This research provides insights into the molecular mechanisms of SD and potential diagnostic tools.