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Updated: May 29, 2025

Brain Banking: Making the Most of your Research Specimens
Published on: July 24, 2009
Preservation of cellular structure via immersion fixation in brain banking
Macy Garrood1, Emma L Thorn2,3, Adam Goldstein2,3
1Apex Neuroscience, Salem, Oregon, USA.
Insights
Formaldehyde immersion fixation effectively preserves human brain tissue, preventing cell death and maintaining ultrastructure for research. However, optimal assessment methods for brain banking remain an open question.
Area of Science:
- Neuroscience
- Histology
- Biotechnology
Background:
- Formaldehyde immersion is standard for human brain preservation in brain banking.
- Concerns exist regarding formaldehyde penetration time and preservation quality in large organs.
- There is a need to validate immersion fixation as an adequate initial preservation method.
Purpose of the Study:
- To evaluate the effectiveness of formaldehyde immersion fixation for human brain tissue.
- To assess preservation quality based on postmortem interval (PMI) and brain region.
- To explore the utility of various microscopy techniques for evaluating structural integrity.
Main Methods:
- Histological examination of hemi-sectioned brain specimens fixed by immersion under refrigeration.
- Light microscopy to assess pericellular/perivascular rarefaction and ghost cells.
- Transmission electron microscopy (TEM) and serial block face scanning electron microscopy (SBF-SEM) to evaluate ultrastructural preservation, including synapses and myelinated axons.
Main Results:
- No significant changes in rarefaction areas were observed with increasing PMI or progression from outer to inner brain regions.
- No significant number of ghost cells (late-stage necrosis) were identified.
- TEM revealed visualized synapses with vacuolization and myelin disbanding in the frontal cortex.
- Serial TEM and SBF-SEM confirmed the traceability of synapses and myelinated axons, respectively, even at extended PMIs (up to 27 hours).
Conclusions:
- Formaldehyde immersion fixation effectively prevents cellular necrosis in human brain tissue.
- This method allows visualization of many ultrastructural features, particularly in superficial brain regions.
- The best method for assessing structural preservation quality in brain banking is application-dependent and requires further investigation.
Abstract:
Immersing the brain in a solution containing formaldehyde is a commonly used method for preserving the structure of human brain tissue in brain banking. However, there are questions about the quality of preservation using this method, as formaldehyde takes a relatively long period of time to penetrate a large organ such as the human brain. As a result, there is a critical need to determine whether immersion fixation is an adequate initial preservation method. To address this, we present exploratory histologic findings from our brain bank following the immersion fixation of hemi-sectioned brain specimens under refrigeration. Using light microscopy, we found that there was no significant change in the size of pericellular or perivascular rarefaction areas based on the postmortem interval (PMI) or on the progression from the outer (frontal cortex) to the inner (striatum) brain regions. Additionally, we did not identify any significant number of ghost cells - a state of late-stage cellular necrosis - in the light micrographs analyzed. Using transmission electron microscopy of tissue from the frontal cortex, we found that synapses could still be visualized, but there was vacuolization and variable degrees of myelin disbanding identified. Using serial section transmission electron microscopy, we found that identified synapses could be traced from one section to the next. Using serial block face scanning electron microscopy, we also found that myelinated axons on 2D images can be traced with high fidelity from one image to the next, even at PMIs of up to 27 hours. Collectively, our data corroborate previous findings that immersion fixation is effective for prevention of cellular necrosis and for visualizing many ultrastructural features in at least the surface areas of the brain. However, how structural preservation quality should best be assessed in brain banking is an open question that depends on the intended research applications.

