γδ T cell receptor recognition of CD1d in a lipid-independent manner

Michael T Rice1, Sachith D Gunasinghe1,2, Chhon Ling Sok1

  • 1Infection and Immunity Program and Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton, Victoria, Australia.

Nature Communications
|December 28, 2025
PubMed

Insights

Human gamma delta T cell receptors (γδ TCRs) can recognize CD1d molecules independently of lipid antigens. This finding reveals a new mechanism for T cell activation and antigen presentation.

Area of Science:

  • Immunology
  • Molecular Biology
  • Structural Biology

Background:

  • The CD1d molecule presents lipid antigens to T cells, including αβ and γδ T cells.
  • Type I natural killer T (NKT) cells show high specificity for CD1d presenting α-galactosylceramide (α-GalCer).
  • The lipid specificity of CD1d-restricted γδ T cells is not well understood.

Purpose of the Study:

  • To investigate the lipid specificity of human γδ T cell receptors (TCRs) for CD1d.
  • To elucidate the molecular mechanisms underlying γδ TCR recognition of CD1d.

Main Methods:

  • Small-angle X-ray scattering (SAXS) to study γδ TCR-CD1d binding.
  • Functional assays to assess T cell activation.
  • Crystal structure analysis of a γδ TCR-CD1d complex.

Main Results:

  • Human γδ TCRs recognize CD1d in a lipid-dependent or lipid-independent manner with varying affinities.
  • γδ TCR-CD1d binding affinity did not reliably predict T cell activation.
  • CD1d presenting endogenous lipids was sufficient for T cell activation, γδ TCR-CD3 clustering, and phosphorylation.
  • Structural analysis revealed γδ TCRs do not contact the lipid antigen within the CD1d binding cleft.

Conclusions:

  • γδ TCRs can recognize CD1d independently of specific lipid antigens.
  • This lipid-independent recognition provides a molecular basis for alternative T cell activation pathways.
  • Findings challenge the paradigm of strict lipid antigen presentation for all CD1d-restricted T cells.

Related Concept Videos

T Cell Activation and Clonal Selection01:22

T Cell Activation and Clonal Selection

T cells are integral to our adaptive immune system, recognizing and effectively responding to foreign antigens. T cell activation and clonal selection are pivotal in orchestrating this immune response. This article elucidates these mechanisms, detailing the roles of cluster of differentiation (CD) markers, major histocompatibility complex (MHC) molecules, costimulatory signals, and the process of clonal selection.
Naive T cells that have not yet encountered an antigen express two primary CD...
14.5K
Diversity of Antigen Receptors01:28

Diversity of Antigen Receptors

Antigen receptors are essential components of the immune system crucial in defending the body against foreign invaders. These receptors are present on the surface of B and T cells, enabling them to recognize antigens and mount an appropriate immune response.
Before encountering any antigen, lymphocytes express these receptors. On B cells, the antigen receptor is a membrane-bound antibody molecule called BCR; on T cells, it is a T cell receptor or TCR. B and T cell receptors are composed of two...
1.3K
Immunoglobulin-like Cell Adhesion Molecules01:31

Immunoglobulin-like Cell Adhesion Molecules

Immunoglobulin-like cell adhesion molecules or Ig-CAMs are a versatile group of cell surface glycoproteins belonging to the immunoglobulin protein superfamily. Ig-CAMs possess the characteristic immunoglobulin protein domains and other domains such as the fibronectin type III domain. The Ig domains are glycosylated to varying degrees in different Ig-CAMs.
Ig-CAMs exhibit either homophilic binding (to other Ig-CAMs) or heterophilic binding (to other ligands such as integrins). While most Ig-CAMs...
4.1K
Receptor-mediated Endocytosis01:39

Receptor-mediated Endocytosis

Overview
110.3K
IP3/DAG Signaling Pathway01:11

IP3/DAG Signaling Pathway

Membrane lipids such as phosphatidylinositol (PI) are precursors for several membrane-bound and soluble second messengers. Specific kinases phosphorylate PI and produce phosphorylated inositol phospholipids. One such inositol phospholipids are the  phosphatidylinositol-4,5 bisphosphate [PI(4,5)P2], present in the inner half of the lipid bilayer. Upon ligand binding, GPCR stimulates Gq proteins to turn on phospholipase Cꞵ. Activated phospholipase Cꞵ cleaves PI(4,5)P2 and...
14.1K
Antigens Involved in Adaptive Immunity01:26

Antigens Involved in Adaptive Immunity

An antigen is any substance the immune system identifies as foreign and potentially harmful to the body, prompting an immune response. Antigens have two functional properties: immunogenicity and reactivity. Immunogenicity is the ability of an antigen to stimulate a specific immune response. At the same time, reactivity describes the antigen's ability to react with the cells and antibodies produced in response to it.
Complete Antigens
Complete antigens possess both immunogenicity and...
1.2K