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Updated: Aug 16, 2026

Assessment of Immunologically Relevant Dynamic Tertiary Structural Features of the HIV-1 V3 Loop Crown R2 Sequence by ab initio Folding
Published on: September 15, 2010
A peptide from the heptad repeat of human immunodeficiency virus gp41 shows both membrane binding and coiled-coil
1Department of Chemistry, University of California, Berkeley 94720, USA.
Insights
The heptad repeat of human immunodeficiency virus type 1 (HIV-1) envelope glycoprotein gp41 forms a coiled coil and binds to host cell membranes, facilitating viral entry. Mutations destabilizing the coiled coil reduce membrane binding.
Area of Science:
- Structural biology
- Virology
- Biophysics
Background:
- The envelope glycoprotein gp41 of HIV-1 mediates viral entry through membrane fusion.
- A critical leucine zipper-like heptad repeat region (residues 553-590) in gp41 is essential for its function.
- Understanding the structure and membrane interactions of this region is key to HIV-1 inhibition.
Purpose of the Study:
- To investigate the solution structure and membrane-binding properties of the gp41 heptad repeat region.
- To determine how mutations affecting coiled-coil stability impact membrane binding.
- To elucidate the dual role of the heptad repeat in viral fusion.
Main Methods:
- Synthesis and nitroxide spin labeling of cysteine-substituted peptide variants.
- Analytical equilibrium ultracentrifugation to study solution structure.
- Electron paramagnetic resonance (EPR) to assess membrane binding to lipid vesicles.
- Site-directed mutagenesis to probe coiled-coil stability and membrane affinity.
Main Results:
- The 38-residue peptide exists primarily as a tetramer in solution, unlike the gp160 protein.
- EPR showed peptides bind to negatively charged lipid vesicles, adopting a monomeric structure parallel to the membrane surface.
- Mutations at the core 'a' position destabilized the coiled coil and reduced membrane-binding affinity.
Conclusions:
- The gp41 heptad repeat functions in two ways: forming a coiled coil and presenting a hydrophobic face for membrane binding.
- Destabilization of the coiled coil correlates with decreased membrane binding.
- These findings support a model where the heptad repeat brings viral and cellular membranes together to facilitate fusion.
Abstract:
The envelope glycoprotein gp41 from human immunodeficiency virus type 1 (HIV-1) is involved in membrane fusion and virus entry. It contains a functionally important leucine zipper-like heptad repeat region (residues 553-590). To investigate the solution structure and membrane-binding properties of this region, cysteine-substituted variants of a 38-residue peptide derived from the heptad repeat were synthesized and modified with nitroxide spin labels. Analytical equilibrium ultracentrifugation studies indicated it is primarily tetrameric in solution, in contrast to the protein gp160 which is a mixture of trimers and tetramers. Electron paramagnetic resonance (EPR) measurements indicated that the peptide was bound to vesicles containing 10 mol % negatively charged lipids. The peptides were bound parallel to the membrane surface, near the water-membrane interface, in a structure different from the solution structure, most likely as monomers. When Asp, Pro, or Ser was substituted for Ile at the core "a" position of the heptad repeat in the middle of the peptide, the coiled coil was destabilized. In addition, these peptides showed reduced membrane-binding affinities. Thus, mutations that destabilized coiled-coil formation also decreased membrane-binding propensity. These experimental results, taken with previous evidence, suggest two functions for the heptad repeat of gp41 after CD4 binding: (1) to form an extended coiled coil; (2) to provide a hydrophobic face that binds to the host-cell membrane, bringing the viral and cellular membranes closer and facilitating fusion.
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